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OX241437.1__CAH9013444.1__VP424E501_P0099__00099

Bact-Vir

OX241437.1__CAH9013444.1__VP424E501_P0099__00099

Identity

Accession:
OX241437 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_424E50-1

TaxID: 2963198

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-61
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 65.0 6.47e-01 100.0% 88.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 5.66e-01 100.0% 63.0%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 70.0 6.72e-01 100.0% 91.2%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.76 66.0 4.92e-01 100.0% 38.9%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 62.0 5.54e-01 100.0% 64.8%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.75 68.0 4.40e-01 100.0% 34.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.75 61.0 6.30e-01 100.0% 93.8%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.75 64.0 4.63e-01 100.0% 34.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 5.50e-01 100.0% 65.2%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 5.14e-01 100.0% 52.2%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 61.0 6.18e-01 100.0% 92.0%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.74 64.0 4.42e-01 100.0% 78.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 5.58e-01 100.0% 71.9%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.73 63.0 5.46e-01 100.0% 63.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 62.0 6.45e-01 94.1% 100.0%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.73 64.0 4.17e-01 100.0% 81.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 5.74e-01 100.0% 72.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 5.89e-01 100.0% 83.9%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 5.40e-01 100.0% 67.9%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.72 59.0 4.44e-01 100.0% 37.6%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 56.0 5.75e-01 88.2% 89.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 64.0 6.10e-01 100.0% 94.9%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 60.0 5.89e-01 100.0% 87.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 61.0 5.64e-01 100.0% 80.6%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.63e-01 100.0% 81.4%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 52.0 3.95e-01 80.4% 64.7%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 54.0 4.15e-01 86.3% 62.6%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 53.0 4.28e-01 86.3% 65.3%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 4.25e-01 100.0% 36.9%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 56.0 4.03e-01 100.0% 75.8%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.65 55.0 3.78e-01 100.0% 82.6%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 4.79e-01 100.0% 61.4%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.64 50.0 3.03e-01 88.2% 45.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 49.0 4.53e-01 86.3% 73.1%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.93e-01 100.0% 86.4%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 52.0 3.23e-01 100.0% 17.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 55.0 5.05e-01 100.0% 77.3%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 48.0 3.53e-01 86.3% 73.2%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 45.0 3.64e-01 80.4% 76.9%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 48.0 3.69e-01 86.3% 86.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 48.0 4.44e-01 94.1% 80.3%
1ne3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 4.24e-01 84.3% 77.9%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.60 49.0 4.05e-01 100.0% 83.2%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 48.0 3.50e-01 100.0% 82.5%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.59 51.0 3.01e-01 100.0% 34.6%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.56 44.0 3.16e-01 92.2% 34.7%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 41.0 2.68e-01 94.1% 42.8%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 3.97e-01 98.0% 91.5%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 40.0 3.36e-01 84.3% 60.4%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.65e-01 94.1% 91.1%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.78e-01 100.0% 88.1%
3g7pA00 1.10.3100.20 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 0.53 39.0 2.95e-01 84.3% 36.6%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.53 40.0 2.86e-01 86.3% 45.7%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.26e-01 100.0% 87.9%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.30e-01 100.0% 82.4%
8gzhC01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.51 43.0 3.08e-01 100.0% 91.7%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3384082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 55.0 6.56e-01 72.5% 94.3%
3376597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 66.0 6.99e-01 80.4% 100.0%
5033600 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 63.0 6.44e-01 86.3% 81.6%
3313403 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.85 55.0 5.34e-01 74.5% 61.8%
3354687 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.84 64.0 4.68e-01 80.4% 39.2%
3308545 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.82 65.0 4.41e-01 84.3% 30.6%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 66.0 6.15e-01 100.0% 72.6%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.80 64.0 6.29e-01 100.0% 81.8%
4121981 4.1.1.325 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.79 69.0 5.09e-01 100.0% 39.2%
4242302 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.79 70.0 6.19e-01 100.0% 70.0%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.79 68.0 6.64e-01 98.0% 87.3%
3198731 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.79 70.0 5.04e-01 100.0% 37.7%
3332609 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.78 65.0 4.80e-01 90.2% 55.2%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 64.0 5.37e-01 100.0% 54.1%
3482225 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.77 71.0 5.12e-01 100.0% 40.0%
4015238 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.77 67.0 5.02e-01 100.0% 40.0%
3930014 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.77 63.0 4.35e-01 88.2% 31.9%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.77 63.0 5.30e-01 100.0% 54.2%
3300226 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.77 69.0 5.89e-01 100.0% 90.0%
3357239 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.77 69.0 4.79e-01 100.0% 45.6%
3225816 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 71.0 6.28e-01 100.0% 91.4%
None — 0.76 69.0 4.02e-01 100.0% 18.0%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 68.0 5.98e-01 100.0% 68.0%
3238405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.22e-01 100.0% 85.5%
3363448 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 68.0 5.70e-01 100.0% 70.6%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.50e-01 100.0% 89.1%
3660563 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 69.0 6.35e-01 100.0% 95.4%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.76 60.0 3.96e-01 86.3% 34.0%
3669214 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 68.0 5.00e-01 100.0% 56.2%
3425872 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 66.0 5.47e-01 98.0% 80.0%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 68.0 5.03e-01 100.0% 57.6%
3622846 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 62.0 6.28e-01 100.0% 92.0%
3302391 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.75 68.0 4.86e-01 100.0% 52.1%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.75 66.0 4.71e-01 100.0% 44.7%
3668420 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.75 66.0 4.46e-01 100.0% 38.4%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.74 62.0 6.12e-01 100.0% 85.5%
3306580 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 6.01e-01 92.2% 96.7%
5039793 219.1.1.77 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 0.74 64.0 4.29e-01 100.0% 32.2%
3503291 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.74 63.0 4.80e-01 100.0% 42.7%
4995784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.75e-01 100.0% 69.3%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 62.0 6.05e-01 100.0% 85.5%
4268386 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.70e-01 100.0% 70.0%
3298989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 63.0 4.82e-01 100.0% 43.6%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.76e-01 100.0% 78.3%
3924375 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.72 63.0 5.58e-01 100.0% 74.7%
171891 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.72 60.0 5.89e-01 100.0% 85.5%
3996279 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.72 64.0 5.50e-01 100.0% 65.0%
3688068 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 61.0 4.32e-01 100.0% 32.0%
3941170 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.71 63.0 5.68e-01 100.0% 78.6%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 3.99e-01 100.0% 22.8%
3317821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.30e-01 94.1% 86.7%
5080210 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.70 60.0 4.01e-01 100.0% 80.9%
4947695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.42e-01 98.0% 84.0%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 3.94e-01 100.0% 21.8%
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 4.93e-01 100.0% 51.6%
3244497 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.70 61.0 4.31e-01 100.0% 32.7%
3576443 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 62.0 5.56e-01 100.0% 91.4%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.19e-01 100.0% 84.7%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.12e-01 100.0% 58.8%
3626615 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 4.78e-01 100.0% 97.3%
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.87e-01 100.0% 90.9%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.69 59.0 5.45e-01 100.0% 75.4%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.08e-01 100.0% 98.8%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.50e-01 100.0% 74.3%
3486329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.40e-01 100.0% 75.4%
3214653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.75e-01 100.0% 56.8%
5063188 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.65 53.0 3.53e-01 92.2% 35.3%
3950458 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.62 52.0 3.58e-01 94.1% 45.6%
138255 9.1.1.6 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE 0.60 49.0 4.03e-01 100.0% 82.4%
5044392 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.71e-01 92.2% 92.7%
5044394 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.27e-01 76.5% 100.0%
3736175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.19e-01 100.0% 61.2%
5044391 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 44.0 4.50e-01 86.3% 98.0%
3255777 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.56 46.0 3.94e-01 100.0% 94.7%
3622714 5.1.5.113 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR19_1st 0.51 42.0 2.58e-01 96.1% 19.4%
3765767 5.1.5.110 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_FAM234A_B 0.50 42.0 2.46e-01 100.0% 19.6%