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OX241442.1__CAH9014753.1__VP495E541_P0249__00249

Bact-Vir

OX241442.1__CAH9014753.1__VP495E541_P0249__00249

Identity

Accession:
OX241442 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_495E54-1

TaxID: 2963207

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86
PDB
Domain cluster: rep: MW824377.1__QZI87609.1__MYOV011v1_p0342__00341__D5-86
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.70 40.0 3.32e-01 82.1% 33.6%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 4.06e-01 96.4% 56.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 37.0 4.10e-01 89.3% 76.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 36.0 3.99e-01 91.7% 72.7%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 34.0 3.76e-01 91.7% 76.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 32.0 3.44e-01 88.1% 65.3%
4jdeA01 2.60.40.3820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.96e-01 92.9% 94.9%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 4.41e-01 96.4% 83.3%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 4.29e-01 98.8% 81.8%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 4.03e-01 98.8% 75.7%
6uioC01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 4.11e-01 97.6% 76.7%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 44.0 3.48e-01 95.2% 78.3%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 40.0 3.69e-01 89.3% 62.3%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 3.90e-01 100.0% 66.2%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.53e-01 83.3% 81.6%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 28.0 3.11e-01 78.6% 64.1%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 3.90e-01 98.8% 67.5%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.68e-01 96.4% 56.2%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.83e-01 97.6% 22.4%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 41.0 3.13e-01 100.0% 36.6%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 43.0 3.91e-01 95.2% 80.5%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.74e-01 100.0% 65.2%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.50 40.0 3.15e-01 100.0% 39.9%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.39e-01 100.0% 55.6%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 40.0 3.63e-01 90.5% 83.9%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.70e-01 81.0% 79.6%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 42.0 3.67e-01 94.0% 88.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4545039 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 42.0 4.55e-01 96.4% 80.0%
3290399 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 46.0 3.91e-01 98.8% 50.4%
3743024 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.58 51.0 4.50e-01 98.8% 99.2%
3172477 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 45.0 3.79e-01 89.3% 99.3%
3693249 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 46.0 4.05e-01 96.4% 92.3%
317 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.54 46.0 4.29e-01 98.8% 81.8%
3587514 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.54 42.0 3.73e-01 95.2% 56.9%
2883135 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.54 46.0 3.23e-01 100.0% 75.0%
3742214 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 45.0 4.25e-01 95.2% 93.3%
4098296 11.1.5.85 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.53 40.0 3.30e-01 82.1% 61.9%
4311277 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 43.0 3.41e-01 94.0% 97.9%
3507768 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 44.0 4.20e-01 95.2% 81.0%
4015826 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.48e-01 85.7% 73.1%
3262556 11.1.1.793 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.52 40.0 3.78e-01 85.7% 69.0%
3550844 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 42.0 3.47e-01 90.5% 71.2%
3235400 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.52 30.0 3.00e-01 89.3% 52.8%
3504703 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 44.0 4.24e-01 100.0% 83.2%
4127062 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.52 43.0 3.25e-01 97.6% 96.6%
3522631 243.3.1.28 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Spp-24 0.52 44.0 4.04e-01 100.0% 72.2%
3693056 11.1.1.964 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26174 0.52 43.0 3.58e-01 95.2% 85.6%
3701022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.65e-01 88.1% 63.2%
4965619 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.92e-01 82.1% 100.0%
3253741 11.1.1.793 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.51 39.0 3.83e-01 82.1% 86.7%
3875088 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.51 43.0 4.02e-01 100.0% 75.0%
169280 222.1.1.23 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ApeI-like 0.50 40.0 3.63e-01 90.5% 83.9%
3264433 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.50 37.0 3.41e-01 81.0% 77.4%