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OX241444.1__CAH9012111.1__VP496E541_P0026__00026

Bact-Vir

OX241444.1__CAH9012111.1__VP496E541_P0026__00026

Identity

Accession:
OX241444 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_496E54-1

TaxID: 2963208

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-95
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d5sB00 2.10.310.10 Mainly Beta › Ribbon › Serpins fold › Serpins superfamily 0.69 27.0 3.82e-01 100.0% 75.6%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.65 40.0 4.41e-01 81.6% 77.1%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.64 40.0 3.87e-01 73.6% 55.1%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 49.0 4.07e-01 93.1% 54.0%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.57 35.0 2.98e-01 73.6% 35.8%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.54 47.0 3.61e-01 97.7% 52.2%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.51e-01 79.3% 53.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 32.0 3.53e-01 80.5% 73.2%
1t71A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 43.0 3.04e-01 88.5% 89.7%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.81e-01 82.8% 88.1%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.61e-01 74.7% 80.2%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.92e-01 92.0% 55.8%
2r2cB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.74e-01 82.8% 85.3%
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 43.0 3.65e-01 90.8% 59.2%
3i8bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.05e-01 94.3% 75.4%
1ksiA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.72e-01 81.6% 83.3%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 40.0 3.51e-01 97.7% 55.5%
1hkfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.59e-01 81.6% 88.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4792646 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.71 27.0 3.90e-01 100.0% 76.3%
4777641 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.68 27.0 3.95e-01 100.0% 90.9%
4831615 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.66 26.0 3.74e-01 100.0% 90.6%
4785460 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.65 26.0 3.77e-01 100.0% 87.9%
4957302 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 45.0 4.47e-01 75.9% 81.1%
3455144 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 34.0 4.19e-01 79.3% 96.0%
5024780 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.58 45.0 3.71e-01 85.1% 95.2%
5019886 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.57 35.0 3.75e-01 75.9% 70.7%
4193792 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.55 48.0 4.42e-01 97.7% 83.5%
5051985 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 41.0 4.12e-01 96.6% 77.8%
3596840 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 3.88e-01 73.6% 82.9%
3709851 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.92e-01 78.2% 85.7%
3999153 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 43.0 4.13e-01 89.7% 95.0%
3935471 4292.1.1.0 ↗ a+b two layers › FlaG-like › FlaG-related › FlaG-related 0.52 38.0 3.86e-01 81.6% 77.6%
3170963 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 36.0 3.13e-01 70.1% 85.4%
3510018 11.1.1.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Motile_Sperm 0.52 40.0 3.91e-01 81.6% 89.5%
4929282 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 35.0 3.73e-01 74.7% 81.3%
5062603 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.63e-01 83.9% 87.5%
4975837 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.89e-01 81.6% 93.3%