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OX241455.1__CAH9013364.1__VP501E541_P0086__00086

Bact-Vir

OX241455.1__CAH9013364.1__VP501E541_P0086__00086

Identity

Accession:
OX241455 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_501E54-1

TaxID: 2963209

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-69
PDB
Domain cluster: rep: IMGVR_UViG_3300033463_000002-3300033463-Ga0310690_10000036215__D12-76
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.67 49.0 2.86e-01 78.3% 9.8%
5fbhA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 53.0 3.90e-01 92.8% 96.3%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 45.0 2.82e-01 75.4% 41.3%
1xjvA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 45.0 3.51e-01 76.8% 82.6%
1jhnA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 50.0 3.54e-01 91.3% 78.0%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 45.0 3.59e-01 78.3% 42.8%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 50.0 4.36e-01 91.3% 84.3%
6iw2A01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.61 44.0 3.64e-01 78.3% 48.1%
3licA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 42.0 3.90e-01 76.8% 58.6%
2b7yA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 42.0 3.12e-01 73.9% 96.7%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 49.0 3.19e-01 91.3% 30.6%
2fe7B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 44.0 3.37e-01 85.5% 46.4%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.52e-01 91.3% 53.0%
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 47.0 3.59e-01 94.2% 80.0%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.56 41.0 4.06e-01 82.6% 81.8%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.86e-01 87.0% 36.1%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 48.0 3.94e-01 100.0% 81.1%
8a9nA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 43.0 3.53e-01 85.5% 57.3%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 44.0 2.85e-01 89.9% 27.1%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.59e-01 91.3% 54.2%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 46.0 3.84e-01 100.0% 79.4%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 2.91e-01 98.6% 72.5%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 46.0 3.86e-01 100.0% 79.8%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 44.0 2.89e-01 89.9% 31.3%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.54 36.0 3.63e-01 78.3% 67.1%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.07e-01 76.8% 85.7%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 44.0 3.58e-01 94.2% 79.7%
5hx0A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 42.0 2.68e-01 91.3% 31.8%
3varA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 42.0 2.90e-01 100.0% 38.8%
2azpA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 40.0 3.24e-01 92.8% 77.7%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.82e-01 98.6% 96.2%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.58e-01 82.6% 26.5%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.57e-01 91.3% 98.2%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 2.96e-01 89.9% 74.4%
3ttqA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 42.0 2.89e-01 94.2% 75.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.90e-01 92.8% 85.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3232669 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.73 59.0 5.02e-01 87.0% 79.1%
3432994 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.71 53.0 4.41e-01 79.7% 75.8%
3516794 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.69 57.0 4.52e-01 91.3% 64.3%
162286 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 57.0 4.75e-01 94.2% 72.0%
4082864 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 56.0 4.90e-01 91.3% 82.9%
3396528 2007.1.2.31 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LBD_receptor 0.68 55.0 4.10e-01 91.3% 96.8%
3400185 2007.1.2.31 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LBD_receptor 0.68 55.0 4.13e-01 91.3% 98.9%
4965148 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 46.0 4.00e-01 72.5% 52.4%
3413517 2007.1.2.31 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LBD_receptor 0.67 54.0 3.97e-01 91.3% 94.4%
3511269 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.67 55.0 4.60e-01 91.3% 70.8%
3965903 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.63 43.0 3.58e-01 71.0% 57.5%
1866769 219.1.1.68 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › RickCE_cat 0.62 53.0 3.66e-01 98.6% 98.5%
3403697 2007.1.2.31 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LBD_receptor 0.61 54.0 4.05e-01 100.0% 97.7%
3962202 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.61 45.0 3.78e-01 78.3% 93.9%
3210459 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 52.0 3.93e-01 100.0% 98.9%
3397645 5.1.4.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.59 45.0 2.90e-01 81.2% 37.8%
4581150 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.57 47.0 3.35e-01 94.2% 66.5%
169663 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.57 45.0 3.56e-01 89.9% 51.0%
3693870 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.56 38.0 3.16e-01 71.0% 58.5%
5038690 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 49.0 3.81e-01 100.0% 84.4%
3648057 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 45.0 2.84e-01 87.0% 40.4%
3370313 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.56 50.0 3.77e-01 100.0% 97.0%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.56 40.0 4.11e-01 73.9% 78.5%
3691054 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.56 47.0 2.92e-01 100.0% 76.9%
3351841 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.55 47.0 3.85e-01 94.2% 86.0%
3660624 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 44.0 2.84e-01 91.3% 94.2%
5069442 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 44.0 2.91e-01 89.9% 32.4%
3175033 4086.1.1.1 ↗ a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.54 37.0 3.44e-01 72.5% 76.7%
3601966 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.54 40.0 3.46e-01 81.2% 83.5%
842 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.54 44.0 3.37e-01 91.3% 52.7%
3948020 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.54 42.0 3.64e-01 85.5% 57.3%
3658750 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.54 46.0 3.88e-01 98.6% 94.4%
3674212 5.1.2.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N+INV_N 0.54 43.0 2.72e-01 89.9% 25.9%
5004280 4112.1.1.1 ↗ beta duplicates or obligate multimers › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX 0.53 46.0 4.53e-01 97.1% 100.0%
4298591 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.53 42.0 3.41e-01 89.9% 71.0%
3445096 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.53 47.0 2.95e-01 100.0% 98.7%
4025881 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.53 44.0 3.48e-01 98.6% 96.4%
None — 0.53 43.0 2.76e-01 92.8% 67.7%
3281176 2003.1.2.113 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Smoa_sbd 0.53 40.0 2.59e-01 85.5% 78.5%
3363566 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 37.0 3.48e-01 75.4% 94.4%
3994778 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.20e-01 81.2% 76.3%
5050697 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.52 36.0 4.22e-01 72.5% 100.0%
3615124 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.52 40.0 2.52e-01 84.1% 48.3%
3288805 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.51 39.0 3.22e-01 89.9% 65.3%
4054729 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 38.0 3.71e-01 79.7% 78.7%
3196992 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.50 41.0 3.06e-01 98.6% 49.8%
5014254 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 34.0 3.66e-01 71.0% 91.7%
3228385 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.50 39.0 2.34e-01 88.4% 21.3%