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OX241455.1__CAH9014377.1__VP501E541_P0193__00193

Bact-Vir

OX241455.1__CAH9014377.1__VP501E541_P0193__00193

Identity

Accession:
OX241455 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_501E54-1

TaxID: 2963209

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-177_256-280
PDB
Domain cluster: rep: IMGVR_UViG_3300028925_007698-3300028925-Ga0310698_11502092__D6-141_209-227
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25680.2 best Mom 51.8 1.20e-13 80.3% 65.8%
D2 high residues 187-252
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.66 49.0 4.28e-01 95.5% 52.0%
5suhA02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.64 54.0 4.65e-01 92.4% 99.0%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 45.0 4.58e-01 80.3% 80.6%
3kzxA02 1.10.150.730 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.62 48.0 4.90e-01 86.4% 95.2%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.62 49.0 4.71e-01 90.9% 98.7%
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 48.0 3.89e-01 90.9% 44.7%
6pw7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.61 44.0 4.35e-01 77.3% 97.2%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 46.0 3.69e-01 87.9% 40.3%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.60 42.0 4.13e-01 98.5% 67.6%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 35.0 3.41e-01 87.9% 51.4%
3fzvD02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 44.0 3.77e-01 81.8% 81.7%
2l4bA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 47.0 4.30e-01 93.9% 92.0%
2kwpA00 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.56 44.0 3.64e-01 90.9% 87.6%
1x4pA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.53 37.0 3.75e-01 100.0% 71.2%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.53 44.0 3.47e-01 93.9% 91.7%
2yayA02 1.20.1670.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase 0.51 39.0 3.17e-01 97.0% 42.2%
2f4iA01 1.10.10.1260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Envelope glycoprotein gp160, DUF2291, helical domain 0.50 35.0 3.65e-01 98.5% 78.7%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3402544 137.1.1.12 ↗ alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › SCHIP-1_C 0.64 52.0 4.61e-01 92.4% 62.1%
4474556 102.1.1.9 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.60 43.0 4.44e-01 75.8% 100.0%
4442036 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.60 45.0 3.95e-01 84.8% 53.0%
3814111 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.58 46.0 4.38e-01 89.4% 83.7%
4299237 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.57 44.0 3.09e-01 89.4% 26.2%
3568978 2004.1.1.222 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RhoGAP_pG1_pG2 0.56 46.0 3.27e-01 87.9% 88.9%
3961958 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.56 45.0 4.07e-01 90.9% 69.5%
3611384 4299.1.1.0 ↗ alpha arrays › BSD domain › BSD domain › BSD domain 0.56 44.0 3.42e-01 90.9% 63.1%
4460812 3016.1.1.11 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA 0.53 39.0 3.45e-01 84.8% 50.9%
4335178 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 39.0 3.45e-01 84.8% 50.9%
3513653 7525.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.53 40.0 2.63e-01 83.3% 74.3%
3737809 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 38.0 3.59e-01 83.3% 84.7%
3247491 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 46.0 2.64e-01 100.0% 12.2%