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OX241556.1__CAH9015817.1__VP141E351_P0063__00063

Bact-Vir

OX241556.1__CAH9015817.1__VP141E351_P0063__00063

Identity

Accession:
OX241556 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_141E35-1

TaxID: 2963168

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-89
PDB
D2 high residues 94-179
PDB
Domain cluster: rep: OY757066.1__CAK1257060.1__K70PH128C1_LOCUS49__00049__D138-228
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19905.5 best DUF6378 39.0 1.10e-09 84.9% 74.1%
D3 high residues 192-237
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 62.0 6.14e-01 100.0% 90.0%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.73 49.0 4.61e-01 71.7% 58.6%
4u7bA01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 58.0 5.72e-01 97.8% 86.3%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 5.16e-01 100.0% 69.3%
2ecbA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 55.0 5.41e-01 100.0% 84.3%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 53.0 4.77e-01 100.0% 60.6%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 50.0 4.60e-01 100.0% 67.6%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 41.0 3.78e-01 71.7% 50.0%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.62 53.0 4.38e-01 100.0% 74.1%
8d8lN01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 35.0 2.83e-01 97.8% 30.2%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 44.0 2.87e-01 80.4% 91.2%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.59 44.0 3.44e-01 87.0% 37.5%
3phuA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 45.0 3.20e-01 95.7% 76.1%
3vkgA10 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 3.06e-01 95.7% 72.4%
3vkhA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 2.76e-01 95.7% 41.6%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.69e-01 93.5% 17.9%
3gvxA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 42.0 2.88e-01 87.0% 69.5%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 45.0 4.00e-01 100.0% 68.6%
2bwjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 2.81e-01 95.7% 75.0%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 40.0 3.60e-01 97.8% 72.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266823 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 73.0 6.90e-01 100.0% 90.9%
3313889 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 6.45e-01 100.0% 98.0%
3909922 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.77 63.0 6.14e-01 91.3% 94.0%
5046694 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 66.0 6.26e-01 100.0% 83.6%
3454767 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 65.0 6.14e-01 97.8% 90.9%
4033611 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.75 58.0 5.87e-01 87.0% 95.6%
3522325 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.74 63.0 5.68e-01 100.0% 69.2%
3884711 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 5.68e-01 100.0% 76.9%
5026209 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 5.70e-01 100.0% 78.3%
3924709 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.74 60.0 5.55e-01 100.0% 76.9%
3928087 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.73 61.0 5.39e-01 100.0% 64.3%
3467989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 62.0 5.75e-01 100.0% 85.0%
3334149 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 62.0 5.87e-01 100.0% 90.9%
4952808 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 5.38e-01 91.3% 85.5%
3454275 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 57.0 5.61e-01 100.0% 86.0%
3781047 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.71 57.0 5.43e-01 100.0% 81.7%
3326259 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.71 58.0 5.73e-01 95.7% 94.0%
3311830 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.71 56.0 4.15e-01 95.7% 36.3%
3899987 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.71 57.0 4.88e-01 100.0% 57.6%
5003693 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 55.0 5.03e-01 91.3% 72.3%
5021354 101.1.2.619 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.70 55.0 5.03e-01 91.3% 72.3%
3506989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 56.0 5.59e-01 100.0% 96.0%
3203378 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.42e-01 100.0% 76.9%
3580501 101.46.1.1 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.70 56.0 4.50e-01 100.0% 42.7%
5008720 101.1.1.548 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.70 54.0 4.96e-01 91.3% 72.3%
3814136 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 5.61e-01 100.0% 90.9%
3443787 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 4.79e-01 100.0% 82.4%
3234027 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.68 54.0 5.10e-01 100.0% 75.0%
3250088 101.46.1.1 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.66 53.0 4.43e-01 100.0% 48.4%
3279033 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 51.0 4.42e-01 100.0% 57.3%
3881355 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.62 43.0 4.28e-01 73.9% 66.0%
3248250 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.62 45.0 2.70e-01 80.4% 10.7%
5012157 605.1.1.354 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 0.56 37.0 3.20e-01 71.7% 38.8%
None — 0.51 40.0 2.45e-01 95.7% 33.2%