←Back to structures
OX241556.1__CAH9016388.1__VP141E351_P0091__00091
Bact-VirOX241556.1__CAH9016388.1__VP141E351_P0091__00091
Identity
- Accession:
- OX241556 ↗
- Kingdom:
- phage
Quality
79.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-88
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.64 | 48.0 | 4.74e-01 | 80.5% | 88.8% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.60 | 36.0 | 4.22e-01 | 72.0% | 90.6% |
| 6grjB01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.55 | 47.0 | 3.11e-01 | 96.3% | 23.7% |
| 1v64A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.55 | 40.0 | 3.76e-01 | 90.2% | 61.1% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.55 | 44.0 | 4.12e-01 | 87.8% | 73.5% |
| 4hhxA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.54 | 37.0 | 3.48e-01 | 72.0% | 89.4% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 48.0 | 4.30e-01 | 97.6% | 72.3% |
| 2gz4A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 45.0 | 3.37e-01 | 92.7% | 40.0% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.51 | 38.0 | 3.81e-01 | 89.0% | 75.3% |
| 2np5D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 44.0 | 3.53e-01 | 95.1% | 87.3% |
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 38.0 | 2.73e-01 | 79.3% | 48.3% |
| 2hkuB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 46.0 | 3.50e-01 | 100.0% | 98.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080963 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 58.0 | 5.73e-01 | 84.1% | 84.7% |
| 3238923 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.71 | 57.0 | 3.47e-01 | 89.0% | 15.2% |
| 3597181 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.64 | 48.0 | 5.06e-01 | 92.7% | 86.7% |
| 3268169 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.64 | 54.0 | 5.09e-01 | 92.7% | 76.0% |
| 3810014 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.63 | 51.0 | 4.39e-01 | 87.8% | 70.5% |
| 2755063 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.63 | 43.0 | 3.14e-01 | 70.7% | 93.9% |
| 4628156 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.60 | 37.0 | 3.27e-01 | 91.5% | 40.8% |
| 4952217 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.58 | 52.0 | 4.39e-01 | 100.0% | 99.3% |
| 3833695 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.57 | 51.0 | 4.86e-01 | 95.1% | 90.5% |
| 4174198 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.57 | 42.0 | 4.05e-01 | 81.7% | 67.0% |
| 3541302 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 51.0 | 4.21e-01 | 100.0% | 93.8% |
| 4963579 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.56 | 47.0 | 3.99e-01 | 91.5% | 67.4% |
| 4943276 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.56 | 50.0 | 4.20e-01 | 100.0% | 97.8% |
| 3617250 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.56 | 35.0 | 3.43e-01 | 86.6% | 57.8% |
| 2426 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.55 | 40.0 | 3.76e-01 | 90.2% | 61.1% |
| 5080625 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.55 | 40.0 | 3.57e-01 | 76.8% | 72.2% |
| 3833548 | 5050.1.1.58 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C | 0.52 | 42.0 | 3.10e-01 | 87.8% | 85.9% |
| 3170063 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.52 | 44.0 | 3.41e-01 | 93.9% | 80.5% |
| 3748236 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 41.0 | 3.21e-01 | 87.8% | 76.4% |
| 4111613 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.52 | 43.0 | 3.84e-01 | 92.7% | 81.7% |
| 3986173 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 48.0 | 3.53e-01 | 100.0% | 83.6% |
| 4967543 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.52 | 42.0 | 2.74e-01 | 87.8% | 83.2% |
| 4164573 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.51 | 43.0 | 3.87e-01 | 92.7% | 77.4% |
D2
high
residues 91-158
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b9kA00 | 2.20.20.70 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.58 | 35.0 | 4.07e-01 | 92.6% | 87.2% |
| 3w1hA01 | 3.90.1150.110 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.58 | 49.0 | 3.63e-01 | 97.1% | 43.9% |
| 2x24A02 | 2.40.460.10 | Mainly Beta › Beta Barrel › ClpP/crotonase fold › Biotin dependent carboxylase carboxyltransferase | 0.54 | 42.0 | 4.26e-01 | 95.6% | 92.4% |
| 1vw3D00 | 3.40.1370.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L4; Chain: A; › Ribosomal protein L4/L1 | 0.54 | 42.0 | 2.91e-01 | 85.3% | 95.4% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 45.0 | 4.14e-01 | 97.1% | 71.0% |
| 3zleI01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.52 | 35.0 | 3.19e-01 | 70.6% | 53.7% |
| 3jb9a02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 32.0 | 3.32e-01 | 97.1% | 66.7% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 41.0 | 4.06e-01 | 94.1% | 81.3% |
| 1cc8A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 34.0 | 3.35e-01 | 92.6% | 65.3% |
| 1j71A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.50 | 42.0 | 3.34e-01 | 100.0% | 42.2% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.50 | 35.0 | 2.64e-01 | 75.0% | 47.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4968450 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 38.0 | 4.14e-01 | 86.8% | 63.6% |
| 3617448 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.63 | 38.0 | 4.07e-01 | 95.6% | 70.0% |
| 3574931 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 39.0 | 4.09e-01 | 75.0% | 75.0% |
| 3653096 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 36.0 | 3.39e-01 | 88.2% | 48.2% |
| 4966283 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 38.0 | 3.88e-01 | 92.6% | 70.8% |
| 3665556 | 2004.1.1.44 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PRK | 0.57 | 34.0 | 2.66e-01 | 72.1% | 29.3% |
| 4536899 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.56 | 48.0 | 3.80e-01 | 97.1% | 71.7% |
| 3176423 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.55 | 42.0 | 3.63e-01 | 88.2% | 92.5% |
| 3377898 | 4.8.1.32 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_PTM | 0.54 | 42.0 | 3.92e-01 | 94.1% | 65.6% |
| 3206671 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.53 | 46.0 | 3.73e-01 | 97.1% | 75.4% |
| 3806470 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 36.0 | 3.77e-01 | 94.1% | 78.3% |
| 3741667 | 7559.1.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal_L4 | 0.52 | 41.0 | 2.91e-01 | 88.2% | 96.5% |
| 3367529 | 5.1.3.234 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7899 | 0.52 | 35.0 | 2.43e-01 | 70.6% | 35.5% |
| 3393827 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.51 | 39.0 | 3.49e-01 | 83.8% | 88.0% |
| 3375958 | 221.1.1.157 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_GT-1 | 0.51 | 38.0 | 3.86e-01 | 82.4% | 97.1% |