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OX241557.1__CAH9016373.1__VP466E531_P0089__00089

Bact-Vir

OX241557.1__CAH9016373.1__VP466E531_P0089__00089

Identity

Accession:
OX241557 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-61
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.78 58.0 5.60e-01 84.5% 71.2%
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 60.0 5.32e-01 86.2% 85.5%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 58.0 5.10e-01 100.0% 74.2%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 49.0 5.00e-01 82.8% 82.5%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.67 47.0 3.94e-01 75.9% 100.0%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 54.0 4.30e-01 93.1% 91.9%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 45.0 3.92e-01 72.4% 96.8%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.65 45.0 4.18e-01 74.1% 57.9%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.65 52.0 4.85e-01 93.1% 100.0%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.64 50.0 3.24e-01 84.5% 98.9%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 43.0 3.26e-01 75.9% 29.3%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 46.0 3.94e-01 84.5% 46.9%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.63 50.0 3.59e-01 89.7% 40.3%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.63 44.0 3.71e-01 74.1% 74.0%
2yadA00 3.30.390.150 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.63 44.0 4.10e-01 75.9% 70.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 3.70e-01 82.8% 92.7%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 47.0 3.98e-01 84.5% 51.0%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 3.52e-01 81.0% 35.8%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 45.0 3.62e-01 82.8% 40.2%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.73e-01 81.0% 42.7%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.67e-01 81.0% 57.4%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.61 37.0 3.25e-01 75.9% 38.5%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 3.93e-01 84.5% 61.9%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.60 48.0 3.63e-01 91.4% 41.1%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.31e-01 79.3% 39.7%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.59 42.0 3.47e-01 77.6% 44.2%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.59 39.0 2.87e-01 75.9% 25.5%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.34e-01 81.0% 40.0%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.42e-01 84.5% 54.7%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.57 39.0 2.87e-01 72.4% 94.6%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 42.0 3.31e-01 86.2% 85.6%
2pm6A00 1.25.40.1030 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 46.0 2.81e-01 91.4% 45.8%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 37.0 3.63e-01 77.6% 73.9%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 40.0 3.12e-01 82.8% 40.9%
2xanA01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.53 35.0 2.68e-01 72.4% 27.3%
8badA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.01e-01 82.8% 81.9%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 47.0 2.93e-01 100.0% 44.8%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 39.0 3.15e-01 86.2% 81.1%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.47e-01 72.4% 81.2%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.55e-01 87.9% 25.2%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.30e-01 93.1% 46.8%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.50 37.0 3.51e-01 89.7% 65.8%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1396826 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.78 58.0 5.57e-01 84.5% 70.1%
5061231 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.76 57.0 5.68e-01 86.2% 78.3%
5020790 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.76 56.0 5.73e-01 84.5% 83.6%
5032509 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.75 58.0 5.64e-01 86.2% 75.4%
3429387 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.72 52.0 5.60e-01 87.9% 100.0%
5015133 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.72 62.0 6.17e-01 100.0% 96.7%
4959887 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.72 60.0 5.71e-01 94.8% 82.9%
4959886 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.72 57.0 5.79e-01 98.3% 94.5%
4969758 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.71 59.0 5.18e-01 94.8% 94.4%
4568757 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.71 56.0 5.54e-01 89.7% 83.3%
4965851 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.70 51.0 5.26e-01 79.3% 81.8%
4959885 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.70 60.0 5.36e-01 100.0% 94.1%
4969162 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.68 57.0 5.68e-01 100.0% 93.3%
5020788 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.68 57.0 5.58e-01 100.0% 87.7%
3933098 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 52.0 5.05e-01 86.2% 86.2%
4494810 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.68 46.0 4.15e-01 70.7% 97.5%
4677990 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 56.0 4.61e-01 98.3% 93.9%
3976684 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.67 58.0 5.27e-01 100.0% 97.5%
3354326 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.67 55.0 5.53e-01 98.3% 93.3%
3329380 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.67 45.0 3.57e-01 70.7% 42.6%
3194733 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 47.0 3.81e-01 77.6% 58.3%
5018724 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.66 56.0 4.79e-01 96.6% 91.6%
3867284 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 49.0 2.84e-01 81.0% 9.2%
3524527 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.65 49.0 3.98e-01 81.0% 42.7%
3618504 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.65 51.0 5.08e-01 96.6% 85.0%
3344139 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 53.0 5.40e-01 100.0% 100.0%
3819067 386.1.1.207 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 0.64 52.0 5.12e-01 96.6% 84.6%
3720028 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 3.70e-01 77.6% 73.0%
3939128 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 45.0 3.65e-01 79.3% 40.0%
4536182 220.1.1.93 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_6 0.63 46.0 3.44e-01 81.0% 29.7%
3773509 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 46.0 4.61e-01 81.0% 76.7%
3675412 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.63 48.0 4.36e-01 89.7% 61.3%
5079725 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.85e-01 84.5% 98.3%
3222943 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.63 56.0 3.61e-01 100.0% 61.4%
3803938 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.63 43.0 3.91e-01 70.7% 65.3%
3478666 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 46.0 3.79e-01 81.0% 43.8%
3493556 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 3.60e-01 79.3% 40.0%
4992374 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.62 54.0 5.23e-01 100.0% 98.5%
3994452 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.62 43.0 2.51e-01 72.4% 21.6%
3913573 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.62 46.0 3.65e-01 81.0% 39.2%
3648024 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.62 43.0 3.38e-01 79.3% 34.4%
3523446 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.61 44.0 3.74e-01 77.6% 76.0%
3174988 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.61 46.0 3.48e-01 86.2% 33.1%
3922234 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.56e-01 77.6% 67.0%
3265019 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 43.0 3.62e-01 77.6% 42.7%
3690811 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.61 44.0 3.71e-01 84.5% 45.0%
3874175 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 47.0 3.71e-01 86.2% 43.2%
3995389 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.61 44.0 3.31e-01 81.0% 31.0%
4120754 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.60 45.0 3.17e-01 87.9% 28.4%
3305609 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.59 43.0 4.00e-01 81.0% 65.0%
3499127 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 3.43e-01 81.0% 39.1%
3511590 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.65e-01 84.5% 44.8%
3895911 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.25e-01 91.4% 33.3%
3882796 1021.1.1.2 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.58 42.0 3.77e-01 79.3% 52.9%
3512572 220.1.1.125 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.58 45.0 3.46e-01 87.9% 37.9%
4680137 220.1.1.154 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.58 42.0 3.09e-01 79.3% 28.1%
3763123 5.1.4.371 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz 0.58 47.0 2.91e-01 96.6% 30.5%
3641336 2003.1.5.353 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PIP5K 0.57 38.0 2.63e-01 70.7% 30.7%
4019606 220.1.1.63 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NF1 0.57 42.0 3.42e-01 81.0% 41.7%
3749834 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.57 45.0 4.60e-01 89.7% 100.0%
3699577 220.1.1.236 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_27 0.57 46.0 3.78e-01 91.4% 49.1%
2410067 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.56 39.0 3.93e-01 75.9% 83.6%
5011618 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 3.66e-01 96.6% 69.3%
3417244 220.1.1.64 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.56 40.0 3.42e-01 75.9% 91.6%
3906078 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.36e-01 84.5% 44.0%
3869545 220.1.1.125 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.56 43.0 3.40e-01 89.7% 37.9%
3262203 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 3.01e-01 84.5% 30.3%
3939412 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 37.0 3.26e-01 79.3% 45.3%
4960615 5.1.3.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7133 0.54 39.0 2.53e-01 82.8% 27.2%
4017263 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 37.0 3.17e-01 72.4% 54.7%
3688000 708.1.2.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.52 36.0 2.65e-01 72.4% 42.4%
3222419 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.52 36.0 3.45e-01 77.6% 68.0%
4958343 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.50 43.0 3.77e-01 96.6% 95.6%