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OX241560.1__CAH9015470.1__VP177E371_P0033__00033

Bact-Vir

OX241560.1__CAH9015470.1__VP177E371_P0033__00033

Identity

Accession:
OX241560 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Vibrio_phage_177E37-1

TaxID: 2963173

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-99
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 52.0 5.09e-01 100.0% 57.1%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 61.0 6.69e-01 77.3% 98.8%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 48.0 6.06e-01 88.7% 96.7%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 51.0 6.07e-01 96.9% 93.8%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.79 51.0 5.24e-01 100.0% 68.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 47.0 4.96e-01 97.9% 70.1%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.72 53.0 4.78e-01 94.8% 57.3%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 44.0 5.21e-01 95.9% 90.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 4.50e-01 75.3% 78.6%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.01e-01 75.3% 72.5%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.10e-01 73.2% 79.1%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.71e-01 73.2% 78.8%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 54.0 4.18e-01 97.9% 61.2%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 42.0 4.33e-01 91.8% 76.6%
2v6eA02 1.20.1440.270 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 39.0 3.59e-01 82.5% 51.2%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.59 48.0 4.22e-01 87.6% 90.8%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.58 50.0 4.38e-01 91.8% 89.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.54e-01 73.2% 82.3%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 41.0 4.09e-01 88.7% 72.8%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 37.0 4.29e-01 100.0% 98.5%
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 41.0 3.58e-01 79.4% 83.2%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.54 47.0 4.34e-01 93.8% 87.2%
4mudC00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 43.0 3.44e-01 95.9% 70.9%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.50 45.0 4.10e-01 100.0% 88.4%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3908306 101.1.1.101 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.91 49.0 6.22e-01 92.8% 86.7%
3967026 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.91 65.0 7.32e-01 75.3% 94.7%
4304581 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.90 55.0 5.63e-01 100.0% 63.8%
4140444 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.90 55.0 5.24e-01 100.0% 54.5%
3282225 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 62.0 6.79e-01 71.1% 87.5%
3284011 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 61.0 7.17e-01 77.3% 97.1%
None — 0.89 54.0 5.19e-01 100.0% 54.5%
4024517 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.89 58.0 5.45e-01 100.0% 56.5%
3288090 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.88 59.0 6.99e-01 77.3% 95.7%
3281471 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.88 58.0 6.34e-01 91.8% 81.2%
3971665 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.88 62.0 6.97e-01 72.2% 96.0%
3971395 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 61.0 6.92e-01 72.2% 93.3%
3973360 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 60.0 7.06e-01 72.2% 98.6%
3971149 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 59.0 6.47e-01 75.3% 85.0%
3951829 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.86 62.0 6.67e-01 75.3% 90.6%
4202221 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.86 52.0 6.22e-01 93.8% 88.2%
4439853 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 57.0 6.58e-01 84.5% 94.3%
3284469 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 60.0 6.77e-01 72.2% 94.7%
4520564 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 52.0 5.78e-01 85.6% 76.2%
4289285 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 57.0 5.91e-01 70.1% 74.4%
4603338 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.84 59.0 6.83e-01 72.2% 100.0%
3289947 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 55.0 6.01e-01 97.9% 81.2%
4121566 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 52.0 5.40e-01 100.0% 67.8%
3573627 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 60.0 5.45e-01 74.2% 57.6%
3959929 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 56.0 6.14e-01 70.1% 83.7%
3283374 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 58.0 5.89e-01 74.2% 73.7%
4205790 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 59.0 6.47e-01 87.6% 88.7%
4303963 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 56.0 6.30e-01 84.5% 89.3%
4237551 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 56.0 5.67e-01 70.1% 70.5%
3284051 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 54.0 6.43e-01 71.1% 100.0%
3969641 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 52.0 5.68e-01 91.8% 77.5%
4233279 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.82 57.0 4.20e-01 72.2% 29.6%
4497189 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 52.0 6.33e-01 92.8% 96.9%
3961841 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 57.0 6.66e-01 74.2% 98.6%
4663875 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.82 57.0 4.19e-01 73.2% 29.2%
4279016 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 59.0 6.39e-01 75.3% 90.0%
3286778 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 55.0 6.40e-01 97.9% 95.7%
3972713 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 66.0 6.75e-01 87.6% 87.4%
4683276 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 50.0 5.13e-01 95.9% 64.2%
3291331 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.81 59.0 6.49e-01 79.4% 92.5%
2464007 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 54.0 6.42e-01 78.4% 100.0%
4243530 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 53.0 6.36e-01 87.6% 100.0%
2817645 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.80 60.0 6.56e-01 100.0% 93.8%
3973709 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 61.0 5.96e-01 100.0% 73.3%
1810916 101.1.1.71 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.80 51.0 6.19e-01 100.0% 98.5%
4388780 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.79 57.0 4.87e-01 73.2% 49.0%
3974736 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 55.0 5.89e-01 72.2% 87.1%
4043241 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 58.0 6.34e-01 78.4% 93.8%
4146353 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 59.0 6.44e-01 78.4% 97.5%
3967748 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 64.0 6.85e-01 86.6% 98.8%
None — 0.78 56.0 4.08e-01 74.2% 29.4%
4238054 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.78 57.0 4.11e-01 75.3% 29.8%
3284461 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 54.0 3.94e-01 72.2% 28.4%
4454772 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 48.0 5.76e-01 95.9% 93.8%
3961604 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 63.0 6.31e-01 87.6% 85.0%
3283863 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 54.0 5.63e-01 73.2% 80.0%
4456068 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 59.0 5.89e-01 100.0% 78.0%
3279339 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.76 54.0 4.23e-01 78.4% 37.8%
3955987 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 54.0 5.48e-01 84.5% 74.7%
3959868 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 53.0 5.96e-01 84.5% 93.3%
4165188 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 55.0 5.88e-01 78.4% 87.1%
3587538 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 51.0 5.94e-01 83.5% 98.5%
3587471 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 56.0 5.12e-01 89.7% 61.0%
4530655 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 52.0 5.22e-01 88.7% 70.0%
3587755 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.74 54.0 4.85e-01 89.7% 56.2%
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 65.0 6.30e-01 100.0% 86.4%
4336182 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 6.04e-01 100.0% 91.1%
4486973 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 54.0 5.77e-01 87.6% 89.4%
4577850 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.68 61.0 6.11e-01 100.0% 93.9%
4396640 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.67 55.0 5.04e-01 87.6% 69.2%
3284292 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.66 54.0 5.58e-01 87.6% 92.2%
3977260 101.1.1.39 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ 0.64 59.0 5.46e-01 100.0% 86.7%
3589532 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 54.0 5.41e-01 100.0% 87.8%
3279596 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.63 55.0 4.37e-01 93.8% 88.9%
5079947 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.52 37.0 3.35e-01 74.2% 70.4%