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OX241562.1__CAH9017088.1__VP150E351_P0161__00161

Bact-Vir

OX241562.1__CAH9017088.1__VP150E351_P0161__00161

Identity

Accession:
OX241562 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_150E35-1

TaxID: 2963171

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-33
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 54.0 3.95e-01 72.7% 27.0%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 49.0 3.14e-01 75.8% 14.4%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 51.0 3.74e-01 87.9% 27.5%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.66 46.0 4.62e-01 75.8% 77.1%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.64 45.0 2.73e-01 72.7% 9.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 3.28e-01 75.8% 24.3%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 3.39e-01 84.8% 48.6%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.62 44.0 3.48e-01 72.7% 30.8%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.61 43.0 3.94e-01 75.8% 76.0%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 3.48e-01 90.9% 94.1%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 45.0 3.31e-01 87.9% 26.1%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.05e-01 81.8% 25.2%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 2.82e-01 75.8% 20.8%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.56 39.0 2.45e-01 78.8% 10.7%
2uv8A04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 41.0 2.37e-01 100.0% 33.8%
2py5A05 4.10.80.20 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 0.56 40.0 4.07e-01 84.8% 93.3%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 44.0 3.24e-01 81.8% 26.2%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.55 38.0 3.42e-01 81.8% 39.7%
1nz8A00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.55 43.0 3.15e-01 100.0% 91.6%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 37.0 2.42e-01 97.0% 12.5%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.21e-01 100.0% 30.7%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 38.0 2.66e-01 81.8% 18.4%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 34.0 2.23e-01 78.8% 12.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2028351 716.1.1.3 ↗ beta duplicates or obligate multimers › Trimeric autotransporter adhesin Trp ring domain › Trimeric autotransporter adhesin Trp ring domain › Trimeric autotransporter adhesin Trp ring domain › Hia_Tpr_ring_dom 0.74 51.0 4.49e-01 72.7% 48.0%
3358123 109.3.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.67 55.0 3.84e-01 100.0% 52.8%
261 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.67 46.0 2.86e-01 72.7% 11.3%
3620976 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.65 46.0 2.86e-01 78.8% 21.4%
3185221 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 54.0 3.05e-01 93.9% 53.2%
3636298 5001.1.1.6 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.63 49.0 2.95e-01 81.8% 28.7%
4882343 2003.1.1.59 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.61 42.0 2.46e-01 72.7% 7.3%
1678532 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.61 43.0 3.52e-01 75.8% 82.9%
3256573 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.61 46.0 2.99e-01 72.7% 14.5%
3455390 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.61 46.0 2.60e-01 93.9% 6.7%
3682186 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 47.0 3.09e-01 72.7% 16.0%
5057091 377.12.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 › Ribosomal_L34e 0.59 43.0 2.99e-01 72.7% 20.0%
3577202 210.1.2.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH,NAAA-beta 0.59 43.0 2.71e-01 90.9% 35.3%
3971622 327.13.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.58 43.0 3.08e-01 100.0% 50.7%
4016863 1.1.9.27 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 0.57 41.0 2.90e-01 84.8% 51.1%
3270055 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.56 40.0 2.75e-01 78.8% 37.1%
3721651 2487.1.1.9 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase 0.54 40.0 2.43e-01 87.9% 48.1%
4160831 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.54 39.0 2.14e-01 78.8% 3.9%
3894181 101.1.2.115 ↗ alpha arrays › HTH › HTH › winged helix domain › CDC27 0.53 39.0 2.60e-01 78.8% 15.4%
4978980 3326.1.1.0 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA 0.53 40.0 2.93e-01 97.0% 32.8%
3384797 361.1.1.0 ↗ few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain 0.52 36.0 3.52e-01 72.7% 60.0%
3524281 210.1.6.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.51 37.0 2.34e-01 81.8% 71.6%