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OX241562.1__CAH9017266.1__VP150E351_P0206__00206

Bact-Vir

OX241562.1__CAH9017266.1__VP150E351_P0206__00206

Identity

Accession:
OX241562 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_150E35-1

TaxID: 2963171

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-80_134-163
PDB
Domain cluster: rep: gwf1_scaffold_41_prodigal-single.1__X__X__00068__D452-529_580-657
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zjtA01 3.40.50.670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.86 71.0 6.97e-01 89.1% 80.3%
1d8cA01 3.20.20.360 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 0.52 41.0 2.77e-01 84.5% 58.5%
3pg5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.32e-01 98.2% 99.0%
3lvuB00 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.51 36.0 2.75e-01 72.7% 51.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1878568 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.94 65.0 6.01e-01 72.7% 58.2%
None — 0.93 66.0 5.39e-01 72.7% 45.9%
4406660 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.90 86.0 6.40e-01 99.1% 73.8%
3520955 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.90 86.0 6.24e-01 100.0% 67.9%
3964707 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.89 84.0 6.41e-01 99.1% 78.7%
None — 0.89 85.0 6.34e-01 99.1% 73.6%
None — 0.89 85.0 6.43e-01 100.0% 80.0%
4124102 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.89 84.0 6.32e-01 99.1% 75.8%
4945733 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.89 84.0 6.23e-01 100.0% 76.4%
4238497 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.88 83.0 6.32e-01 99.1% 77.4%
2452014 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.87 82.0 6.18e-01 99.1% 76.6%
1165402 2006.1.3.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim,TOPRIM_C 0.87 62.0 5.55e-01 72.7% 57.6%
3164150 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.86 77.0 5.93e-01 94.5% 78.2%
4100838 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.81 77.0 5.91e-01 100.0% 75.4%
3952965 2002.1.1.67 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.53 45.0 3.30e-01 94.5% 76.2%
1720447 7529.1.1.3 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N 0.51 37.0 3.25e-01 75.5% 60.2%
3662464 7581.1.1.6 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.51 40.0 3.54e-01 87.3% 95.9%
D2 medium residues 81-133
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m4iA02 3.30.1490.440 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.76 64.0 5.96e-01 96.2% 100.0%