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OX241563.1__CAH9015665.1__VP382E491_P0024__00024

Bact-Vir

OX241563.1__CAH9015665.1__VP382E491_P0024__00024

Identity

Accession:
OX241563 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_382E49-1

TaxID: 2963189

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-74
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.67 47.0 3.83e-01 74.3% 66.7%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 53.0 4.03e-01 90.5% 61.7%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 46.0 4.00e-01 74.3% 68.4%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.91e-01 74.3% 85.3%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 49.0 4.19e-01 85.1% 53.7%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.67e-01 71.6% 77.4%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 42.0 3.88e-01 70.3% 86.0%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 3.76e-01 74.3% 64.7%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.61 42.0 3.29e-01 71.6% 44.0%
3wa1A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 41.0 3.31e-01 71.6% 100.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.00e-01 87.8% 83.9%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.59 51.0 4.81e-01 98.6% 85.7%
2i1sA00 3.10.290.30 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like 0.57 39.0 3.03e-01 71.6% 59.0%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.54e-01 73.0% 76.7%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 45.0 4.18e-01 89.2% 96.9%
3fgtA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.56 26.0 2.92e-01 71.6% 54.5%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 43.0 3.88e-01 83.8% 86.5%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 42.0 3.96e-01 86.5% 77.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 42.0 4.17e-01 82.4% 100.0%
2olsA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 47.0 3.63e-01 100.0% 94.0%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 42.0 3.81e-01 85.1% 95.2%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.63e-01 82.4% 89.2%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.07e-01 90.5% 74.3%
2v1lA00 3.10.450.430 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 0.53 38.0 3.29e-01 79.7% 89.9%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.43e-01 87.8% 49.6%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 36.0 3.44e-01 81.1% 86.6%
3zypA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.13e-01 100.0% 90.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3781471 220.1.1.169 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_26 0.68 49.0 3.68e-01 74.3% 61.1%
3548274 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 48.0 4.06e-01 74.3% 65.0%
3544563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 48.0 4.26e-01 74.3% 80.0%
3699097 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 46.0 4.17e-01 74.3% 84.0%
4028176 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 46.0 4.05e-01 74.3% 71.8%
3598224 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 45.0 3.87e-01 74.3% 70.6%
3177027 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 44.0 3.39e-01 74.3% 60.0%
3602037 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 3.73e-01 73.0% 64.2%
3801400 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 44.0 2.96e-01 74.3% 32.8%
3257543 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.62 44.0 3.26e-01 74.3% 40.0%
4565886 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 44.0 3.60e-01 74.3% 71.7%
3562058 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 44.0 3.68e-01 74.3% 68.0%
4301851 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 3.57e-01 74.3% 66.4%
3493653 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.62 43.0 3.25e-01 73.0% 72.1%
3609866 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.62 42.0 3.29e-01 71.6% 77.1%
4322227 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.62 49.0 4.36e-01 87.8% 94.5%
3178227 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.62 43.0 2.82e-01 74.3% 27.4%
3971461 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 48.0 4.54e-01 85.1% 98.9%
3572708 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 43.0 3.74e-01 73.0% 65.2%
3860723 633.23.1.33 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin, GSG-1 0.61 42.0 3.07e-01 73.0% 64.3%
4093535 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 43.0 3.60e-01 74.3% 61.5%
3546981 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.60 42.0 3.46e-01 73.0% 65.7%
3743328 633.33.1.1 ↗ alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz 0.60 42.0 2.97e-01 73.0% 72.5%
3506170 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 41.0 3.22e-01 73.0% 62.4%
3758839 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 41.0 3.27e-01 73.0% 64.4%
3785928 220.1.1.245 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29445 0.59 41.0 3.22e-01 73.0% 60.0%
3968971 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.59 46.0 4.37e-01 85.1% 97.8%
1283866 220.1.1.51 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.59 47.0 4.00e-01 87.8% 83.9%
26896 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.59 45.0 4.32e-01 83.8% 84.9%
177877 219.1.1.43 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase 0.59 44.0 3.21e-01 85.1% 28.4%
3232810 220.1.1.49 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.59 41.0 3.29e-01 73.0% 51.6%
3477882 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 3.27e-01 74.3% 60.6%
3768346 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.58 45.0 4.58e-01 85.1% 96.0%
4995759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 3.98e-01 73.0% 78.8%
3599152 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.58 42.0 3.50e-01 78.4% 76.4%
3967199 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.05e-01 85.1% 95.2%
3788142 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 40.0 3.53e-01 74.3% 70.8%
3226400 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 44.0 4.16e-01 83.8% 81.1%
3266727 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 38.0 3.41e-01 70.3% 72.2%
3386975 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 45.0 3.90e-01 85.1% 96.5%
3935343 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.57 40.0 3.19e-01 74.3% 69.7%
3270877 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 40.0 3.30e-01 74.3% 66.4%
3230347 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.56 40.0 2.52e-01 74.3% 18.8%
5043146 3386.1.1.0 ↗ beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related 0.56 42.0 4.01e-01 85.1% 97.9%
5018015 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 40.0 3.23e-01 75.7% 42.8%
3881126 4.1.1.361 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_KDM3B, PWWP_KDM3B, DUF7030 0.56 49.0 3.47e-01 100.0% 86.1%
3035660 3794.1.1.1 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.56 41.0 3.42e-01 78.4% 79.3%
4994580 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 41.0 2.57e-01 86.5% 93.0%
3927774 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.52 37.0 2.83e-01 74.3% 40.6%
3405565 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.52 42.0 3.88e-01 87.8% 90.5%
3821287 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.52 41.0 3.34e-01 85.1% 51.4%
3622137 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 40.0 3.81e-01 90.5% 71.1%
4934934 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.52 40.0 2.91e-01 86.5% 81.4%
3592904 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.51 42.0 2.79e-01 100.0% 40.5%
3736744 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.51e-01 97.3% 98.6%
3407820 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 39.0 3.77e-01 90.5% 76.5%
4019053 11.1.1.837 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TAF2_3rd 0.50 36.0 3.00e-01 78.4% 86.4%