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OX241563.1__CAH9016402.1__VP382E491_P0059__00059

Bact-Vir

OX241563.1__CAH9016402.1__VP382E491_P0059__00059

Identity

Accession:
OX241563 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-37
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 1.00 74.0 4.90e-01 78.4% 23.4%
7e9uA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.98 72.0 3.97e-01 78.4% 6.4%
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.98 72.0 4.64e-01 78.4% 20.1%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.97 71.0 5.13e-01 78.4% 31.5%
1vh6A01 6.10.140.1940 Special › Helix non-globular › Helix Hairpins › 0.96 74.0 5.21e-01 81.1% 30.9%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.95 70.0 6.15e-01 78.4% 55.8%
3kwoA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.95 72.0 4.60e-01 81.1% 20.1%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.94 69.0 4.51e-01 78.4% 21.0%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.94 72.0 6.29e-01 81.1% 57.7%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.93 68.0 6.31e-01 78.4% 63.0%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.93 68.0 6.25e-01 78.4% 61.7%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.92 68.0 4.36e-01 78.4% 19.6%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.92 70.0 5.53e-01 81.1% 43.5%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.92 67.0 5.05e-01 78.4% 34.9%
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.92 72.0 4.87e-01 83.8% 44.8%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.90 71.0 4.69e-01 83.8% 41.3%
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.88 63.0 4.78e-01 78.4% 33.7%
4i17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.88 80.0 4.77e-01 100.0% 21.9%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.87 79.0 5.17e-01 100.0% 52.4%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.87 65.0 4.49e-01 81.1% 26.5%
3t33A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.87 76.0 4.24e-01 94.6% 15.5%
6fbtA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.87 76.0 5.88e-01 100.0% 47.4%
4ebjA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.86 77.0 5.10e-01 97.3% 66.9%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.86 64.0 5.59e-01 81.1% 56.4%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.86 63.0 4.86e-01 81.1% 36.6%
3craB01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.85 63.0 4.75e-01 81.1% 34.9%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.85 61.0 5.37e-01 78.4% 54.5%
4m7cB00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.85 77.0 4.73e-01 100.0% 82.8%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.84 62.0 5.19e-01 81.1% 50.0%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.84 75.0 5.38e-01 100.0% 74.3%
6fdpA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.84 74.0 5.11e-01 100.0% 62.5%
2ho1B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.84 75.0 4.52e-01 100.0% 34.8%
3bgeA01 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.83 74.0 5.37e-01 100.0% 63.5%
4k51B00 1.25.40.860 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.82 74.0 4.74e-01 100.0% 64.2%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.82 69.0 4.77e-01 94.6% 58.7%
1iwpG02 1.10.1510.20 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Propanediol/glycerol dehydratase, small subunit 0.82 63.0 4.66e-01 83.8% 75.3%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.82 71.0 4.41e-01 100.0% 53.5%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.81 60.0 5.24e-01 81.1% 53.6%
6he1B01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.79 56.0 4.79e-01 78.4% 45.3%
2gz6A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.78 67.0 3.82e-01 100.0% 39.8%
3gonA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.78 69.0 4.60e-01 100.0% 73.9%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.78 67.0 4.22e-01 100.0% 22.2%
1tkeA03 3.30.54.20 Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › 0.77 52.0 4.51e-01 70.3% 48.3%
5bylA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.77 55.0 3.48e-01 78.4% 14.4%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 63.0 4.49e-01 100.0% 67.8%
1h72C02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.74 66.0 4.41e-01 100.0% 69.6%
3ph0C00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.73 60.0 5.50e-01 100.0% 92.5%
3ziuA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.71 60.0 3.68e-01 100.0% 23.8%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.71 50.0 3.38e-01 75.7% 19.7%
3ljnA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.70 58.0 3.45e-01 100.0% 23.7%
1qu3A04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.69 60.0 4.00e-01 100.0% 64.7%
2bkkC02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.63 51.0 3.34e-01 94.6% 22.5%
4efcA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.63 48.0 4.10e-01 75.7% 45.9%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.62 48.0 3.90e-01 97.3% 46.3%
6l1kA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 50.0 3.22e-01 94.6% 24.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4942636 3390.1.1.0 extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT 1.00 74.0 6.87e-01 78.4% 64.4%
140767 632.8.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › DUF6853 1.00 74.0 4.90e-01 78.4% 23.4%
3230314 192.17.1.6 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 0.99 74.0 5.73e-01 78.4% 41.4%
4466369 5000.4.1.0 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.99 73.0 4.36e-01 78.4% 13.5%
4997706 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.98 73.0 4.08e-01 78.4% 8.2%
4469597 192.17.1.11 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › UVR 0.98 73.0 6.22e-01 78.4% 52.7%
4472442 192.11.1.1 alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR 0.98 73.0 7.07e-01 78.4% 72.5%
3240315 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.98 72.0 5.06e-01 78.4% 29.0%
3412260 109.4.1.1581 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29127 0.97 75.0 4.18e-01 81.1% 8.3%
5024994 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.97 75.0 4.98e-01 81.1% 25.0%
4386662 3291.1.1.158 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Seryl_tRNA_N 0.97 72.0 4.85e-01 78.4% 25.2%
4541925 5000.4.1.0 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.97 71.0 4.24e-01 78.4% 12.9%
4162803 159.1.2.1 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH 0.96 71.0 4.93e-01 78.4% 27.6%
4465007 3004.1.1.5 alpha bundles › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain › FCD 0.96 71.0 5.44e-01 78.4% 38.7%
3771633 4156.1.1.3 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DSHCT 0.95 72.0 4.53e-01 81.1% 18.2%
3471268 375.10.1.2 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.95 69.0 5.36e-01 78.4% 38.7%
3262528 138.1.1.0 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.95 69.0 5.24e-01 78.4% 36.3%
3788436 5076.2.1.9 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo 0.94 69.0 3.88e-01 78.4% 7.9%
3738445 109.4.1.1139 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HIR3_TPR_N 0.94 78.0 4.67e-01 89.2% 28.4%
3240245 192.17.1.1 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn 0.94 69.0 6.16e-01 78.4% 58.0%
3280308 192.11.1.0 alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB 0.94 69.0 7.05e-01 78.4% 82.9%
4256933 109.10.1.0 alpha superhelices › Repetitive alpha hairpins › Translin › Translin 0.94 74.0 4.39e-01 83.8% 44.0%
5056298 4070.1.1.2 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.93 68.0 4.08e-01 78.4% 13.2%
3826508 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.92 67.0 5.50e-01 78.4% 44.6%
991025 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.91 66.0 6.22e-01 78.4% 64.4%
3924201 375.10.1.2 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.91 66.0 5.42e-01 78.4% 45.3%
4930198 605.1.1.2 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.90 66.0 5.54e-01 78.4% 48.3%
4193 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.90 67.0 6.41e-01 81.1% 69.8%
1175575 109.4.1.292 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like 0.87 73.0 6.21e-01 91.9% 87.7%
4196809 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 79.0 4.66e-01 100.0% 36.7%
4081962 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 79.0 4.43e-01 100.0% 24.3%
4663148 109.4.1.1137 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT10_TPR 0.86 78.0 4.19e-01 100.0% 12.9%
4961158 5076.2.1.3 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF4013 0.86 63.0 3.80e-01 78.4% 13.2%
3442831 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.85 77.0 4.23e-01 100.0% 16.1%
4966900 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.83 77.0 6.22e-01 100.0% 75.4%
3285243 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.82 72.0 4.21e-01 94.6% 71.5%
3608328 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 73.0 4.58e-01 100.0% 61.7%
4958554 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.80 76.0 4.43e-01 100.0% 61.7%
5032443 601.1.3.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 0.76 65.0 4.01e-01 97.3% 51.4%
4381762 558.1.1.26 alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.63 52.0 2.91e-01 97.3% 7.8%