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OX241568.1__CAH9016247.1__VP282E431_P0046__00046
Bact-VirOX241568.1__CAH9016247.1__VP282E431_P0046__00046
Identity
- Accession:
- OX241568 ↗
- Kingdom:
- phage
Quality
73.2
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-63
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 52.0 | 4.62e-01 | 90.0% | 53.4% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.72 | 52.0 | 4.08e-01 | 90.0% | 37.8% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.71 | 44.0 | 3.72e-01 | 75.0% | 36.8% |
| 8fbcA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.71 | 63.0 | 3.59e-01 | 100.0% | 11.3% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.71 | 48.0 | 4.24e-01 | 72.5% | 52.5% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.65 | 51.0 | 4.14e-01 | 92.5% | 44.9% |
| 2oblA02 | 1.20.1270.330 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 51.0 | 4.37e-01 | 97.5% | 87.8% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 52.0 | 4.26e-01 | 92.5% | 50.0% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 52.0 | 4.14e-01 | 92.5% | 45.0% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 46.0 | 3.34e-01 | 100.0% | 26.0% |
| 1tf5A04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.63 | 46.0 | 2.97e-01 | 80.0% | 19.8% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 53.0 | 3.90e-01 | 100.0% | 35.1% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 48.0 | 4.00e-01 | 90.0% | 47.3% |
| 4mk3A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 52.0 | 3.88e-01 | 100.0% | 39.1% |
| 1oc2A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.62 | 44.0 | 3.63e-01 | 95.0% | 40.3% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 48.0 | 3.90e-01 | 100.0% | 42.1% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 48.0 | 3.68e-01 | 100.0% | 36.4% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 48.0 | 3.05e-01 | 90.0% | 18.4% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 47.0 | 3.92e-01 | 92.5% | 49.3% |
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 47.0 | 3.23e-01 | 90.0% | 25.5% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.59 | 45.0 | 3.84e-01 | 92.5% | 47.9% |
| 4wv4B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.59 | 43.0 | 3.24e-01 | 80.0% | 33.3% |
| 4egwA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.59 | 50.0 | 3.64e-01 | 100.0% | 33.6% |
| 2mjfB00 | 1.20.1440.260 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.59 | 48.0 | 3.74e-01 | 100.0% | 40.0% |
| 2xauA04 | 1.10.10.2130 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DEAH helicase family, winged-helix domain | 0.58 | 41.0 | 4.01e-01 | 80.0% | 80.9% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.58 | 47.0 | 3.13e-01 | 100.0% | 67.7% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.58 | 47.0 | 3.29e-01 | 100.0% | 58.3% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 49.0 | 3.56e-01 | 100.0% | 75.8% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.57 | 50.0 | 4.26e-01 | 100.0% | 64.6% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.54 | 39.0 | 3.58e-01 | 82.5% | 57.1% |
| 1ho8A02 | 1.25.40.150 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain | 0.53 | 41.0 | 3.18e-01 | 100.0% | 76.8% |
| 1nktA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.53 | 46.0 | 2.99e-01 | 100.0% | 23.7% |
| 1gzuA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 42.0 | 2.73e-01 | 100.0% | 46.7% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032954 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.80 | 71.0 | 6.62e-01 | 100.0% | 90.0% |
| 3360995 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.75 | 47.0 | 2.81e-01 | 72.5% | 9.1% |
| 4851781 | 610.2.1.1 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical | 0.69 | 49.0 | 3.73e-01 | 80.0% | 31.9% |
| 4156290 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.66 | 52.0 | 5.01e-01 | 92.5% | 77.8% |
| 4378877 | 3711.1.1.20 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DUF444 | 0.65 | 51.0 | 4.15e-01 | 92.5% | 46.7% |
| 3989810 | 3291.1.1.5 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Relaxase_C | 0.64 | 52.0 | 4.07e-01 | 97.5% | 61.1% |
| 3516672 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.63 | 43.0 | 2.79e-01 | 70.0% | 49.7% |
| 3295355 | 1008.1.1.1 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36_C | 0.62 | 49.0 | 3.62e-01 | 90.0% | 33.3% |
| 3781728 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.59 | 49.0 | 3.04e-01 | 95.0% | 70.8% |
| 1066850 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.59 | 49.0 | 2.89e-01 | 100.0% | 48.5% |
| 3674603 | 219.1.1.48 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C65 | 0.59 | 45.0 | 2.81e-01 | 87.5% | 15.9% |
| 1388497 | 3444.1.1.3 ↗ | alpha arrays › DP domain › DP domain › DP domain › Hit1_C | 0.59 | 48.0 | 3.74e-01 | 100.0% | 40.0% |
| 4937231 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.57 | 49.0 | 3.23e-01 | 100.0% | 23.7% |
| 3896721 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 45.0 | 3.70e-01 | 90.0% | 52.0% |
| 3839778 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.56 | 47.0 | 4.19e-01 | 97.5% | 73.3% |
| 3569516 | 7022.1.1.0 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein | 0.55 | 44.0 | 2.90e-01 | 92.5% | 20.0% |
| 4591712 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.55 | 45.0 | 3.09e-01 | 100.0% | 24.8% |
| 4996586 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.55 | 41.0 | 2.96e-01 | 92.5% | 26.4% |
| 3479078 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 41.0 | 2.94e-01 | 100.0% | 26.5% |
D2
high
residues 84-146
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.87 | 66.0 | 4.39e-01 | 93.7% | 22.5% |
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.86 | 64.0 | 4.82e-01 | 79.4% | 35.5% |
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 61.0 | 6.60e-01 | 81.0% | 98.1% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.80 | 55.0 | 3.84e-01 | 71.4% | 27.2% |
| 4h0pB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.74 | 54.0 | 3.59e-01 | 82.5% | 21.2% |
| 1zx3A01 | 1.10.287.1020 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like | 0.73 | 52.0 | 4.64e-01 | 74.6% | 94.1% |
| 1vfrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.72 | 42.0 | 2.85e-01 | 85.7% | 17.1% |
| 1dbzA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.72 | 50.0 | 3.56e-01 | 76.2% | 25.0% |
| 1t7lA02 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.70 | 56.0 | 3.49e-01 | 88.9% | 85.9% |
| 3gbhB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.63 | 47.0 | 3.24e-01 | 79.4% | 52.6% |
| 3fewX02 | 3.30.1310.40 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › | 0.62 | 43.0 | 3.77e-01 | 73.0% | 88.4% |
| 4ksaA02 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.61 | 46.0 | 3.63e-01 | 82.5% | 46.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3725377 | 192.15.1.44 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF6604 | 0.91 | 67.0 | 5.79e-01 | 76.2% | 53.3% |
| 4828003 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.83 | 70.0 | 5.55e-01 | 92.1% | 47.9% |
| 3516870 | 5094.1.1.0 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like | 0.81 | 65.0 | 5.38e-01 | 85.7% | 51.4% |
| 3276289 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.80 | 66.0 | 4.44e-01 | 88.9% | 54.2% |
| 4864636 | 7008.1.1.1 ↗ | alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa | 0.72 | 51.0 | 4.41e-01 | 74.6% | 61.9% |
| 4149728 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.70 | 52.0 | 4.85e-01 | 81.0% | 65.0% |