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OX241570.1__CAH9015525.1__VP230E391_P0009__00009

Bact-Vir

OX241570.1__CAH9015525.1__VP230E391_P0009__00009

Identity

Accession:
OX241570 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_230E39-1

TaxID: 2963179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 53-127
PDB
Domain cluster: rep: BK061589.1__DBA08843.1__X__00017__D52-129
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.78 54.0 5.88e-01 100.0% 85.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 43.0 4.48e-01 100.0% 63.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 40.0 4.24e-01 100.0% 61.5%
6ku8A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 50.0 5.19e-01 100.0% 79.7%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 49.0 5.13e-01 100.0% 79.7%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.70 60.0 4.56e-01 100.0% 41.6%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 45.0 4.63e-01 100.0% 71.8%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.67 62.0 5.70e-01 100.0% 80.0%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.66 51.0 5.10e-01 98.7% 79.7%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 49.0 3.76e-01 100.0% 33.9%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 48.0 4.40e-01 98.7% 60.4%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.64 53.0 4.58e-01 100.0% 58.3%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.63 51.0 5.10e-01 100.0% 86.7%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.62 52.0 4.67e-01 100.0% 65.1%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.05e-01 100.0% 65.4%
7uwjC02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.60 43.0 4.00e-01 100.0% 59.8%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 4.37e-01 100.0% 70.3%
1el6A02 2.20.20.20 Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain 0.59 36.0 4.22e-01 93.3% 97.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 53.0 4.21e-01 100.0% 67.3%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.57 46.0 4.01e-01 92.0% 91.9%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 50.0 3.32e-01 98.7% 23.9%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.03e-01 98.7% 73.1%
1zyoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 43.0 4.21e-01 100.0% 75.9%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.56 39.0 2.96e-01 86.7% 28.6%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.56 38.0 3.53e-01 72.0% 69.2%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.14e-01 100.0% 72.2%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 4.07e-01 100.0% 68.4%
7uvpA03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 47.0 3.87e-01 98.7% 76.6%
1f0xA04 3.30.1370.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › D-lactate dehydrogenase, cap domain, subdomain 2 0.54 41.0 3.99e-01 82.7% 78.8%
3smzA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 38.0 3.52e-01 90.7% 56.7%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.54 43.0 3.65e-01 100.0% 52.0%
1ow0A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.93e-01 100.0% 67.0%
1jeyA02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.54 46.0 3.97e-01 100.0% 84.1%
1n7vA03 2.70.250.10 Mainly Beta › Distorted Sandwich › receptor-binding protein prd1-p2, domain 3 › receptor-binding protein prd1-p2, domain 3 0.54 41.0 2.99e-01 85.3% 80.2%
1o70A01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.52 43.0 3.53e-01 90.7% 90.7%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 3.26e-01 89.3% 89.3%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.52 43.0 2.96e-01 94.7% 26.9%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.51 43.0 3.53e-01 100.0% 66.0%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.02e-01 100.0% 77.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963092 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.79 57.0 5.22e-01 100.0% 58.9%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 43.0 4.66e-01 100.0% 66.2%
3948975 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 57.0 5.77e-01 100.0% 82.7%
4952364 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.70 53.0 5.09e-01 100.0% 70.6%
1779597 1.15.1.1 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp7 domain V › Baseplate wedge protein gp7 domain V › Gp7_5th 0.70 47.0 4.25e-01 72.0% 51.5%
5057186 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 53.0 4.99e-01 100.0% 67.8%
4260208 1.1.13.62 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.69 62.0 5.50e-01 100.0% 69.5%
3943285 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 63.0 5.50e-01 100.0% 75.2%
3261759 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 51.0 4.91e-01 100.0% 70.6%
185291 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.67 53.0 5.20e-01 100.0% 80.0%
4030357 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.67 52.0 4.92e-01 100.0% 70.0%
5022644 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 53.0 4.90e-01 100.0% 68.4%
5038876 1.1.13.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.66 60.0 5.63e-01 98.7% 84.4%
4033372 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 59.0 5.16e-01 100.0% 70.0%
3926448 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.65 54.0 4.98e-01 100.0% 71.6%
4883825 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.64 57.0 5.32e-01 100.0% 79.3%
169594 1.1.13.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 0.64 53.0 4.58e-01 100.0% 58.3%
3789214 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.64 56.0 5.00e-01 100.0% 69.5%
3802388 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.62 49.0 4.78e-01 100.0% 78.3%
3511361 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 51.0 5.30e-01 100.0% 98.6%
5042402 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.62 46.0 5.05e-01 98.7% 98.3%
5059104 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.40e-01 100.0% 63.8%
3250792 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 43.0 4.63e-01 96.0% 87.7%
3569505 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.60 47.0 4.37e-01 100.0% 68.4%
3992051 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 46.0 4.16e-01 98.7% 60.0%
3185910 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.59 49.0 3.09e-01 92.0% 56.2%
3595114 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 52.0 4.66e-01 100.0% 72.4%
3734783 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.58 47.0 3.00e-01 88.0% 52.3%
3749000 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.58 46.0 4.01e-01 100.0% 57.4%
3589938 223.1.1.59 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.57 43.0 3.42e-01 84.0% 61.8%
4254454 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.57 41.0 2.86e-01 88.0% 22.4%
3945834 1.1.7.79 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.57 50.0 4.60e-01 100.0% 76.0%
5079559 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 48.0 4.25e-01 100.0% 80.9%
3445473 11.1.1.855 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 0.55 44.0 3.04e-01 100.0% 24.0%
3650798 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 3.70e-01 100.0% 53.9%
3268575 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 4.19e-01 100.0% 65.2%
3547480 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.54 42.0 3.68e-01 100.0% 53.6%
3228954 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.94e-01 100.0% 59.2%
3651021 11.1.1.855 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 0.54 44.0 3.89e-01 100.0% 61.8%
3917151 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.53 44.0 4.13e-01 100.0% 73.7%
4096792 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.53 38.0 2.85e-01 77.3% 67.3%
3929182 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.53 45.0 4.07e-01 100.0% 68.2%
3470937 223.1.1.11 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.53 38.0 3.01e-01 78.7% 69.4%
3289656 331.3.1.26 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2867 0.52 46.0 3.72e-01 100.0% 88.7%
3934401 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 47.0 4.13e-01 100.0% 72.7%
5048223 2003.1.5.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 0.52 39.0 2.90e-01 85.3% 93.5%
3621396 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.71e-01 98.7% 60.9%