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OX241572.1__CAH9016483.1__VP275E431_P0052__00052

Bact-Vir

OX241572.1__CAH9016483.1__VP275E431_P0052__00052

Identity

Accession:
OX241572 ↗
Kingdom:
phage

Quality

69.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Vibrio_phage_275E43-1

TaxID: 2963184

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-54
PDB
Domain cluster: representative
CATH (71)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.81 71.0 6.98e-01 100.0% 90.2%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 59.0 5.85e-01 79.2% 100.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 62.0 5.58e-01 85.4% 76.9%
1k82B01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.75 65.0 4.82e-01 100.0% 67.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 5.82e-01 97.9% 96.6%
1ee8A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.73 63.0 4.76e-01 100.0% 65.0%
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.72 62.0 4.53e-01 100.0% 66.9%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.71 54.0 3.32e-01 85.4% 29.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.26e-01 93.8% 87.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.31e-01 93.8% 91.9%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 3.97e-01 93.8% 43.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 5.15e-01 93.8% 92.1%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 5.12e-01 100.0% 97.3%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.67 50.0 3.12e-01 85.4% 31.2%
5j60A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 48.0 3.22e-01 79.2% 51.3%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.73e-01 95.8% 89.0%
1trbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 46.0 3.11e-01 75.0% 54.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 4.81e-01 93.8% 86.2%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 46.0 3.23e-01 77.1% 57.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 4.69e-01 95.8% 85.3%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 47.0 3.37e-01 79.2% 44.1%
4zn0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 45.0 3.23e-01 77.1% 51.2%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 5.03e-01 95.8% 95.9%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.63 51.0 4.29e-01 95.8% 61.8%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 42.0 3.37e-01 70.8% 59.8%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 45.0 3.20e-01 79.2% 45.2%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.61 49.0 4.17e-01 100.0% 82.8%
3d1cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 43.0 2.81e-01 77.1% 53.5%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.61 49.0 3.75e-01 95.8% 40.3%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 45.0 2.77e-01 81.2% 30.7%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 49.0 4.07e-01 95.8% 56.5%
2dyiA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.60 51.0 4.31e-01 100.0% 61.9%
4yshA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 3.01e-01 85.4% 62.5%
3ctyB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 3.16e-01 85.4% 55.5%
3if9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 3.00e-01 85.4% 62.5%
1l9fA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 45.0 3.09e-01 85.4% 54.5%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 46.0 3.30e-01 93.8% 46.8%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.59 48.0 4.05e-01 97.9% 60.2%
2olnA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 45.0 2.98e-01 85.4% 62.1%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 43.0 2.70e-01 79.2% 30.9%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 2.89e-01 100.0% 24.9%
3oc4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 49.0 3.79e-01 100.0% 95.0%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.58 46.0 3.90e-01 100.0% 94.8%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 45.0 2.78e-01 95.8% 23.4%
4k7zA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 48.0 3.76e-01 100.0% 93.2%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 43.0 3.06e-01 85.4% 40.5%
3fvcA01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.54e-01 77.1% 72.5%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 40.0 2.50e-01 79.2% 35.8%
2fvgA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 47.0 4.10e-01 95.8% 69.7%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.56 43.0 3.81e-01 89.6% 97.5%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.50e-01 100.0% 86.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.56 42.0 3.97e-01 89.6% 68.2%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 2.77e-01 100.0% 41.0%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 3.43e-01 93.8% 94.0%
3oo2A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.55 46.0 3.34e-01 100.0% 38.0%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 3.59e-01 100.0% 94.7%
4adiA01 2.60.98.30 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Rubella membrane glycoprotein E1, domain 1 0.55 41.0 3.65e-01 87.5% 83.1%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 39.0 2.48e-01 79.2% 28.3%
1k3xA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.54 43.0 3.40e-01 100.0% 62.7%
2r9zA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.60e-01 100.0% 94.1%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 39.0 2.51e-01 83.3% 28.3%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 42.0 2.66e-01 93.8% 45.8%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.73e-01 95.8% 69.5%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.24e-01 100.0% 78.8%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 38.0 2.49e-01 79.2% 31.3%
1xdiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.40e-01 100.0% 95.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 43.0 3.28e-01 100.0% 57.0%
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 41.0 3.06e-01 100.0% 96.4%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.09e-01 100.0% 74.7%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 38.0 2.46e-01 81.2% 29.9%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 2.61e-01 85.4% 59.3%
ECOD (93)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 68.0 7.06e-01 95.8% 100.0%
3388315 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 62.0 6.64e-01 91.7% 100.0%
5043697 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 62.0 5.63e-01 85.4% 80.0%
4076879 4.1.1.87 ↗ beta barrels › SH3 › SH3 › SH3 › FLgD_tudor 0.80 70.0 6.91e-01 97.9% 98.0%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.79 67.0 6.41e-01 93.8% 98.2%
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 69.0 6.59e-01 97.9% 89.1%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 66.0 5.55e-01 93.8% 65.0%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.78 66.0 5.32e-01 93.8% 60.0%
3588979 4.1.1.137 ↗ beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.78 64.0 6.03e-01 93.8% 86.4%
3901366 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.74 60.0 3.62e-01 93.8% 28.8%
3950193 4.1.1.137 ↗ beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.74 61.0 6.00e-01 95.8% 96.2%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 61.0 5.40e-01 97.9% 80.0%
3234820 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 59.0 3.54e-01 97.9% 91.7%
4395103 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 59.0 4.85e-01 97.9% 58.9%
3633533 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.69 54.0 3.31e-01 91.7% 31.0%
4003604 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 51.0 4.06e-01 83.3% 78.1%
4452870 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 56.0 4.63e-01 95.8% 63.3%
4957350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.18e-01 100.0% 78.5%
1868637 2003.1.2.94 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO, Pyr_redox_2 0.66 48.0 3.63e-01 79.2% 83.5%
4220608 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.66 53.0 4.73e-01 95.8% 78.7%
4203993 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 56.0 4.51e-01 97.9% 61.1%
4188663 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 54.0 4.41e-01 95.8% 60.0%
5025104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.23e-01 91.7% 88.0%
1868644 2003.1.2.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2+FAD_oxidored 0.66 48.0 3.65e-01 79.2% 86.3%
3287075 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.65 46.0 2.98e-01 75.0% 46.8%
4229140 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 56.0 4.57e-01 97.9% 65.6%
2323952 4.29.1.1 ↗ beta barrels › SH3 › Pyrrolysyl-tRNA synthetase tRNA binding domain › Pyrrolysyl-tRNA synthetase tRNA binding domain › PF31240 0.65 51.0 4.41e-01 93.8% 62.8%
4596341 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 54.0 4.41e-01 95.8% 55.8%
4391995 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 56.0 4.70e-01 100.0% 65.9%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.65 52.0 4.85e-01 100.0% 72.3%
4547532 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 52.0 4.47e-01 95.8% 64.7%
3235791 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.65 48.0 2.98e-01 81.2% 27.8%
5011840 2003.1.2.40 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored 0.65 46.0 2.73e-01 77.1% 36.3%
4208972 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 53.0 4.26e-01 95.8% 56.0%
4521547 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 53.0 4.39e-01 95.8% 58.9%
4942405 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.64 46.0 2.72e-01 79.2% 48.8%
3999853 331.2.1.7 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM1_C_vert_fung 0.64 53.0 3.94e-01 100.0% 70.6%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.79e-01 100.0% 78.6%
4042679 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 52.0 4.44e-01 95.8% 67.1%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.07e-01 97.9% 90.0%
4132820 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 53.0 4.18e-01 95.8% 63.8%
4969612 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.64 46.0 2.78e-01 79.2% 50.3%
3966626 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 52.0 4.34e-01 95.8% 61.1%
3228872 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.63 46.0 2.81e-01 81.2% 23.6%
4286344 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 53.0 4.36e-01 100.0% 64.2%
4440308 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 53.0 4.33e-01 100.0% 57.9%
4977799 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.62 44.0 2.65e-01 77.1% 35.2%
3882821 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.62 47.0 2.89e-01 81.2% 31.8%
5033045 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.62 45.0 2.70e-01 79.2% 61.9%
4399542 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 51.0 4.31e-01 97.9% 63.3%
3237464 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 46.0 2.82e-01 81.2% 25.4%
4965483 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.62 49.0 2.98e-01 93.8% 29.3%
3934999 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 46.0 2.84e-01 81.2% 29.3%
4982875 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.62 45.0 3.06e-01 79.2% 51.8%
None — 0.62 43.0 2.79e-01 75.0% 60.0%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.95e-01 100.0% 90.9%
3218924 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 45.0 2.76e-01 81.2% 23.7%
4493188 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 51.0 4.19e-01 97.9% 60.0%
None — 0.62 46.0 2.88e-01 81.2% 26.8%
4975047 2003.1.2.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.62 43.0 2.79e-01 77.1% 59.3%
4068826 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 49.0 4.12e-01 95.8% 62.2%
4928498 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 47.0 2.86e-01 85.4% 72.2%
4099755 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.61 44.0 2.56e-01 79.2% 33.5%
3584918 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 45.0 2.81e-01 81.2% 32.0%
3214110 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 44.0 2.71e-01 81.2% 29.6%
163768 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 51.0 4.30e-01 100.0% 61.2%
1790230 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.60 46.0 3.02e-01 85.4% 89.2%
5006730 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.60 45.0 2.75e-01 85.4% 52.6%
3930110 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 44.0 2.72e-01 81.2% 29.0%
4966210 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 45.0 2.96e-01 85.4% 58.3%
4085735 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 49.0 4.15e-01 100.0% 64.4%
3942580 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 45.0 2.71e-01 85.4% 51.6%
4539645 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 45.0 2.73e-01 85.4% 53.6%
3409719 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 44.0 2.70e-01 81.2% 27.2%
3584992 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 42.0 2.80e-01 81.2% 39.1%
4204514 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 47.0 3.96e-01 100.0% 62.1%
4003008 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 42.0 2.68e-01 81.2% 29.0%
3897981 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 42.0 2.60e-01 81.2% 27.6%
4386008 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 48.0 3.55e-01 100.0% 91.4%
4980537 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.57 43.0 3.02e-01 85.4% 58.3%
5016827 5090.1.1.11 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.57 41.0 3.19e-01 79.2% 51.3%
3798506 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 41.0 2.49e-01 79.2% 24.9%
3971930 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 46.0 3.33e-01 100.0% 70.6%
3767440 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 41.0 2.55e-01 79.2% 28.0%
3562015 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 41.0 2.54e-01 79.2% 27.8%
3647467 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.55 46.0 3.59e-01 100.0% 93.9%
3961503 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.55 41.0 2.96e-01 85.4% 77.5%
4471663 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 42.0 3.56e-01 95.8% 54.7%
3951630 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.53 44.0 3.29e-01 100.0% 77.9%
4655639 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.53 43.0 2.68e-01 100.0% 32.8%
4989099 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 43.0 2.74e-01 100.0% 54.6%
3912241 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.52 41.0 2.57e-01 95.8% 37.8%
4931129 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.51 41.0 3.58e-01 100.0% 65.9%
D2 high residues 90-186
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bh1X00 3.30.300.160 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain 0.67 37.0 4.33e-01 82.5% 77.9%
1ggpA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.61 42.0 3.62e-01 70.1% 59.7%
2g5xA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.60 45.0 3.73e-01 78.4% 65.1%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 3.01e-01 81.4% 57.5%
1r4qA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 45.0 3.72e-01 84.5% 63.3%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 41.0 2.84e-01 78.4% 53.9%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 3.04e-01 84.5% 58.3%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 29.0 3.20e-01 76.3% 61.0%
1g61A00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.53 40.0 3.09e-01 80.4% 72.9%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.53 39.0 3.48e-01 82.5% 53.6%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 39.0 3.98e-01 80.4% 87.5%
3triA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 41.0 3.48e-01 86.6% 93.5%
5bseA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 3.35e-01 84.5% 82.7%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.51 38.0 3.72e-01 78.4% 87.6%
2rcyA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 3.47e-01 84.5% 96.1%
4dg8A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 34.0 3.53e-01 80.4% 72.8%
3fruA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 43.0 3.58e-01 93.8% 74.6%
4egeA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 40.0 3.62e-01 89.7% 60.7%
1pv9B01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 34.0 3.24e-01 82.5% 57.1%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.50 37.0 3.50e-01 78.4% 89.9%
2gerA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 41.0 3.44e-01 89.7% 94.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3409029 331.23.1.2 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.65 43.0 4.85e-01 77.3% 89.2%
3968611 327.8.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like › MshEN 0.61 37.0 3.86e-01 74.2% 64.4%
3480258 5.1.4.467 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF12 0.57 43.0 2.91e-01 80.4% 54.3%
4026983 604.1.1.135 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 0.57 44.0 3.36e-01 81.4% 38.2%
3207771 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.57 43.0 3.53e-01 82.5% 66.3%
3189690 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.57 43.0 2.89e-01 81.4% 77.1%
3632467 5.1.4.266 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st 0.57 44.0 2.63e-01 83.5% 26.8%
4609005 2003.1.1.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › F420_oxidored 0.57 42.0 3.49e-01 77.3% 89.4%
3564372 5.1.4.295 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_DCAF12 0.57 43.0 2.78e-01 80.4% 46.9%
3589527 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.56 42.0 2.93e-01 80.4% 64.1%
4621323 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 42.0 4.37e-01 80.4% 91.1%
4121383 5.1.3.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.55 42.0 2.96e-01 80.4% 67.0%
3381414 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.55 37.0 3.18e-01 70.1% 58.1%
3794065 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 43.0 2.87e-01 84.5% 41.1%
3705234 5.1.4.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.54 41.0 2.63e-01 81.4% 69.4%
5000517 232.1.1.1 ↗ a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › eIF-6 0.54 40.0 3.06e-01 78.4% 54.8%
3717755 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.54 41.0 3.19e-01 81.4% 62.3%
1320692 331.21.1.1 ↗ a+b two layers › TBP-like › Sporulation inhibitor of replication protein SirA › Sporulation inhibitor of replication protein SirA › SirA 0.53 39.0 3.48e-01 82.5% 53.6%
3708351 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 40.0 2.80e-01 79.4% 41.2%
3167976 5.1.4.289 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, ANAPC4_WD40 0.53 39.0 2.39e-01 79.4% 62.6%
3934835 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 40.0 2.80e-01 81.4% 40.9%
3845007 5.1.5.183 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, DUF4800, NBCH_WD40 0.53 41.0 2.76e-01 84.5% 47.6%
1275030 2484.3.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.53 37.0 3.44e-01 82.5% 56.7%
3335997 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.52 41.0 3.77e-01 84.5% 100.0%
3954986 213.5.1.0 ↗ a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain 0.52 39.0 3.63e-01 81.4% 78.1%
3303185 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.52 41.0 3.56e-01 86.6% 78.1%
3592074 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.27e-01 79.4% 15.4%
3388278 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.89e-01 84.5% 54.0%