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OX241572.1__CAH9016577.1__VP275E431_P0059__00059

Bact-Vir

OX241572.1__CAH9016577.1__VP275E431_P0059__00059

Identity

Accession:
OX241572 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Vibrio_phage_275E43-1

TaxID: 2963184

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-72
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 46.0 4.37e-01 70.9% 96.9%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 4.80e-01 100.0% 69.7%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 53.0 3.36e-01 87.3% 23.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.65 51.0 4.87e-01 96.4% 74.2%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 45.0 3.86e-01 72.7% 96.7%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 44.0 3.81e-01 70.9% 93.3%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 48.0 4.28e-01 80.0% 67.1%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 5.07e-01 98.2% 92.2%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 44.0 4.30e-01 72.7% 77.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 50.0 5.05e-01 98.2% 88.9%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 53.0 4.08e-01 98.2% 94.7%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 4.08e-01 70.9% 98.4%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.62 49.0 2.94e-01 85.5% 23.9%
3kg5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 3.70e-01 80.0% 91.3%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.25e-01 100.0% 92.0%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.61 46.0 3.01e-01 87.3% 43.6%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.81e-01 98.2% 89.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 44.0 4.73e-01 90.9% 93.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.45e-01 96.4% 76.7%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 52.0 3.40e-01 100.0% 54.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 47.0 4.62e-01 100.0% 83.3%
2ytyA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.84e-01 83.6% 88.6%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.31e-01 92.7% 73.0%
5g5tA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 42.0 2.90e-01 80.0% 48.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 45.0 4.64e-01 98.2% 98.1%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.57 44.0 3.42e-01 85.5% 92.1%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.57e-01 94.5% 94.1%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.45e-01 96.4% 90.4%
4k4kA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.56 49.0 3.78e-01 100.0% 43.3%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.56 47.0 3.39e-01 94.5% 49.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.64e-01 90.9% 100.0%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 48.0 3.92e-01 100.0% 92.7%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.27e-01 94.5% 82.9%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 48.0 3.91e-01 100.0% 91.8%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.60e-01 96.4% 98.3%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.18e-01 98.2% 72.8%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.41e-01 83.6% 94.4%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.63e-01 98.2% 98.1%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.55 44.0 4.52e-01 92.7% 98.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 3.99e-01 98.2% 68.5%
1pjzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 35.0 2.43e-01 70.9% 18.4%
7x4qA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 38.0 2.94e-01 80.0% 78.8%
2btwA00 3.90.70.30 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain 0.54 46.0 3.14e-01 98.2% 78.1%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 44.0 4.40e-01 96.4% 100.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 45.0 4.42e-01 100.0% 100.0%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.09e-01 100.0% 80.8%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.16e-01 98.2% 83.6%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 4.10e-01 98.2% 81.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 41.0 3.99e-01 98.2% 91.0%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 43.0 3.41e-01 100.0% 44.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 36.0 2.87e-01 80.0% 98.5%
2gx9A00 3.30.420.330 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Influenza virus non-structural protein, effector domain 0.51 39.0 3.18e-01 92.7% 65.9%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.88e-01 98.2% 81.9%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 42.0 3.59e-01 98.2% 80.2%
7bi2A02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 43.0 3.32e-01 100.0% 43.9%
2do8A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.50 41.0 3.04e-01 98.2% 89.9%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 6.62e-01 98.2% 96.4%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.40e-01 100.0% 81.8%
3602032 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 58.0 4.16e-01 92.7% 81.9%
3717498 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 58.0 3.90e-01 92.7% 72.7%
3784980 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.68 53.0 4.31e-01 85.5% 79.0%
4429329 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 54.0 5.20e-01 100.0% 76.9%
3205853 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.68 53.0 4.42e-01 85.5% 83.2%
4002261 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 53.0 3.07e-01 87.3% 13.8%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.67 56.0 5.27e-01 100.0% 77.9%
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.66 51.0 3.77e-01 87.3% 78.1%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.66 46.0 4.08e-01 72.7% 71.2%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 51.0 4.95e-01 100.0% 81.5%
4122525 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 51.0 4.68e-01 100.0% 69.3%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 49.0 4.49e-01 100.0% 66.7%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 51.0 4.94e-01 100.0% 81.5%
4335951 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 53.0 4.92e-01 100.0% 75.3%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 5.07e-01 100.0% 85.7%
3866505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 5.03e-01 98.2% 89.1%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 47.0 4.68e-01 98.2% 80.0%
4029093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 3.54e-01 100.0% 31.0%
4404324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.50e-01 96.4% 81.2%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.61 50.0 4.65e-01 100.0% 73.3%
4104975 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.60 48.0 2.90e-01 87.3% 24.1%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.88e-01 100.0% 89.1%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 50.0 4.72e-01 100.0% 75.7%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.60 49.0 4.73e-01 100.0% 81.5%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 50.0 4.75e-01 100.0% 81.4%
4564673 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.60 47.0 2.86e-01 87.3% 44.0%
4269844 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 47.0 4.43e-01 100.0% 71.4%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 49.0 4.54e-01 100.0% 72.0%
4208040 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 48.0 4.44e-01 100.0% 71.2%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.43e-01 96.4% 72.9%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 48.0 4.46e-01 100.0% 71.2%
4286562 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 50.0 4.74e-01 100.0% 81.5%
3786078 109.4.1.1764 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.59 44.0 2.59e-01 81.8% 45.1%
3759446 4.1.1.73 ↗ beta barrels › SH3 › SH3 › SH3 › Cul7 0.58 48.0 4.11e-01 92.7% 84.4%
3258610 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.47e-01 100.0% 68.8%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 47.0 4.55e-01 100.0% 81.5%
4003604 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.13e-01 98.2% 81.0%
3492757 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.52e-01 96.4% 75.7%
5033222 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.57 43.0 3.48e-01 81.8% 69.5%
3913334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.14e-01 96.4% 67.1%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.57 47.0 4.44e-01 98.2% 77.1%
4998620 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.57 46.0 2.96e-01 92.7% 53.0%
5045214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.41e-01 100.0% 78.6%
3790897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.08e-01 100.0% 62.0%
3768346 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.56 47.0 4.30e-01 96.4% 69.3%
3505437 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 48.0 4.20e-01 98.2% 70.6%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.56 46.0 4.05e-01 100.0% 60.0%
4957888 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.56 41.0 4.03e-01 100.0% 75.0%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.20e-01 98.2% 76.9%
149114 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.55 41.0 3.32e-01 81.8% 92.7%
3921237 391.1.2.13 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1-VW_OTOGL 0.54 42.0 2.95e-01 87.3% 69.0%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.54 46.0 4.39e-01 100.0% 86.2%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.18e-01 100.0% 84.6%
4004815 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.54 46.0 3.64e-01 100.0% 54.5%
4936914 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.53 42.0 3.66e-01 100.0% 56.2%
4942805 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.53 45.0 3.95e-01 94.5% 67.1%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.53 40.0 3.55e-01 98.2% 53.3%
4968405 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 42.0 3.41e-01 89.1% 68.2%
3879172 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 43.0 4.15e-01 100.0% 100.0%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 43.0 3.68e-01 100.0% 56.0%
3929784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.33e-01 94.5% 100.0%
3508453 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 30.0 3.43e-01 81.8% 80.0%
3591670 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.28e-01 90.9% 92.7%
3898170 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 42.0 3.97e-01 100.0% 96.0%
3832602 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 42.0 3.43e-01 94.5% 57.3%
3802925 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.50 42.0 3.85e-01 100.0% 96.2%