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OX241573.1__CAH9016290.1__VP381E491_P0045__00045

Bact-Vir

OX241573.1__CAH9016290.1__VP381E491_P0045__00045

Identity

Accession:
OX241573 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 45.0 3.02e-01 78.8% 29.9%
2gacB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.61 41.0 3.00e-01 80.8% 25.9%
3daoB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.61 43.0 3.15e-01 76.9% 25.5%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.58 42.0 3.33e-01 78.8% 37.9%
4oteA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 36.0 2.97e-01 90.4% 29.8%
4ywoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 41.0 3.18e-01 94.2% 33.3%
6r8gB02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.58 46.0 3.23e-01 88.5% 44.7%
3hz4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 40.0 3.21e-01 76.9% 75.8%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 43.0 3.53e-01 84.6% 84.6%
4hvlA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.57 41.0 2.53e-01 78.8% 83.2%
5dcmB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.36e-01 76.9% 94.9%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 36.0 3.33e-01 71.2% 47.9%
3hupA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 35.0 2.71e-01 80.8% 28.1%
1uqtA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 39.0 2.57e-01 76.9% 40.3%
1wxcB01 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.55 37.0 3.63e-01 75.0% 88.7%
7z2bK01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 38.0 2.40e-01 76.9% 88.8%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 36.0 3.61e-01 98.1% 67.3%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 35.0 3.53e-01 98.1% 65.5%
1gwcA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 3.44e-01 80.8% 98.8%
1b96A00 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.53 37.0 2.49e-01 76.9% 50.0%
4iu9A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.52 44.0 2.66e-01 100.0% 28.3%
2k5iA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 35.0 3.16e-01 86.5% 48.7%
4iw9B01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 36.0 2.93e-01 75.0% 80.4%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.51 38.0 3.57e-01 82.7% 78.8%
3fvqA02 2.40.50.450 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 32.0 3.41e-01 84.6% 77.3%
6kghA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 37.0 2.56e-01 78.8% 92.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3254760 220.1.1.29 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.69 58.0 4.46e-01 98.1% 53.6%
3890751 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 58.0 4.89e-01 96.2% 76.7%
5059406 220.1.1.291 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_4 0.67 57.0 5.07e-01 96.2% 89.3%
3936608 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.39e-01 98.1% 60.9%
3499778 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 41.0 4.12e-01 71.2% 66.7%
3269549 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.55e-01 98.1% 66.5%
4163716 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.58 41.0 4.12e-01 75.0% 76.4%
3317525 7512.1.1.77 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_N 0.57 34.0 2.21e-01 86.5% 11.8%
3494553 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.56e-01 94.2% 59.6%
4177977 3962.1.1.0 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.56 47.0 3.46e-01 98.1% 85.3%
4339052 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.55 37.0 3.21e-01 75.0% 45.0%
4250277 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.55 38.0 3.45e-01 73.1% 88.6%
3937970 102.1.3.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.55 46.0 3.18e-01 98.1% 40.0%
4100290 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.54 37.0 3.22e-01 71.2% 80.0%
3290347 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.06e-01 73.1% 98.0%
3786768 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 38.0 2.44e-01 90.4% 16.3%
1790181 331.22.1.2 a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.52 44.0 3.01e-01 98.1% 41.5%
5080313 2485.1.1.38 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 0.52 35.0 3.19e-01 76.9% 98.8%
1806521 331.3.1.50 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF29358 0.51 44.0 3.36e-01 98.1% 66.9%
1518916 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.50 34.0 2.59e-01 73.1% 44.0%
D2 medium residues 53-106
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.76 54.0 5.72e-01 75.9% 97.9%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.76 55.0 4.83e-01 75.9% 80.3%
2honA02 1.20.1250.30 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.75 54.0 3.88e-01 75.9% 58.2%
4m52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 49.0 3.23e-01 77.8% 17.6%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 59.0 4.76e-01 100.0% 87.5%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 53.0 5.19e-01 94.4% 79.7%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 53.0 5.24e-01 94.4% 84.7%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.64 55.0 3.47e-01 98.1% 28.9%
4xaaA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.64 52.0 3.50e-01 92.6% 74.2%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 51.0 4.96e-01 96.3% 79.0%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.63 52.0 4.84e-01 94.4% 73.2%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 48.0 4.06e-01 87.0% 51.0%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 53.0 5.13e-01 94.4% 100.0%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.62 54.0 4.17e-01 100.0% 72.8%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.61 48.0 4.58e-01 96.3% 73.4%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 50.0 4.62e-01 94.4% 100.0%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.60 49.0 4.19e-01 94.4% 56.8%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 49.0 4.76e-01 96.3% 95.0%
5mmjn01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 45.0 3.93e-01 96.3% 98.9%
1ac1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 42.0 3.04e-01 96.3% 27.7%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 36.0 3.51e-01 77.8% 65.0%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 37.0 3.25e-01 79.6% 52.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026366 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.91 67.0 4.51e-01 77.8% 23.3%
4644248 4952.1.1.0 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.82 62.0 4.96e-01 79.6% 43.0%
3410271 4120.1.1.40 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › ASC 0.79 69.0 5.56e-01 100.0% 55.2%
3290070 5011.1.1.0 extended segments › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa 0.77 62.0 6.19e-01 87.0% 94.5%
3471120 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.76 56.0 5.31e-01 79.6% 76.9%
3383782 5041.1.1.19 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › DUF3464 0.75 54.0 4.60e-01 77.8% 47.8%
4947726 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.73 59.0 4.98e-01 88.9% 53.3%
4979716 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.73 54.0 3.93e-01 79.6% 30.7%
3512559 192.1.1.37 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.73 51.0 4.84e-01 74.1% 69.2%
3997668 4307.1.1.2 alpha duplicates or obligate multimers › EB1 dimerisation domain-like › EB1 dimerisation domain-like › EB1 dimerisation domain-like › EB1 0.73 64.0 6.10e-01 98.1% 89.1%
3509225 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.70 61.0 4.66e-01 100.0% 85.4%
4949008 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.69 58.0 3.78e-01 94.4% 22.3%
3316706 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 61.0 4.96e-01 98.1% 66.0%
4219465 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.68 55.0 4.35e-01 88.9% 60.0%
4944244 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.67 55.0 3.42e-01 94.4% 15.8%
3989094 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 51.0 4.73e-01 87.0% 64.3%
3477166 5059.1.1.4 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.67 48.0 3.83e-01 79.6% 38.3%
4444553 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.65 53.0 3.27e-01 94.4% 15.1%
4929436 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.65 50.0 4.48e-01 87.0% 68.8%
3610787 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.65 56.0 3.37e-01 100.0% 81.0%
4979163 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.64 54.0 3.97e-01 98.1% 84.5%
4026983 604.1.1.135 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 0.63 54.0 3.59e-01 96.3% 39.5%
3996264 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.63 54.0 3.81e-01 98.1% 84.1%
3247204 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 52.0 5.08e-01 94.4% 86.7%
5035232 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.62 49.0 4.56e-01 88.9% 100.0%
3424167 3826.1.1.84 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF7797 0.62 53.0 4.74e-01 100.0% 80.0%
5036362 2007.1.7.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH_2 0.62 52.0 3.30e-01 98.1% 41.8%
3327321 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.61 53.0 4.44e-01 96.3% 78.9%
3513849 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 46.0 3.53e-01 83.3% 46.2%
3305981 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.61 50.0 3.18e-01 96.3% 46.6%
3934868 168.1.1.0 alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain 0.59 48.0 3.63e-01 96.3% 36.3%
3707894 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 41.0 3.91e-01 74.1% 98.5%
4822508 3681.1.1.0 a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.57 50.0 4.28e-01 96.3% 74.7%
3520738 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.57 45.0 3.36e-01 94.4% 32.3%
3677344 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.56 47.0 2.88e-01 100.0% 80.0%