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OX241574.1__CAH9015947.1__VP242E401_P0025__00025

Bact-Vir

OX241574.1__CAH9015947.1__VP242E401_P0025__00025

Identity

Accession:
OX241574 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-81
PDB
D2 medium residues 95-136
PDB
Domain cluster: representative
CATH (83)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 72.0 7.01e-01 100.0% 87.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 74.0 6.28e-01 100.0% 67.6%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 74.0 6.70e-01 100.0% 87.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.83 75.0 6.46e-01 100.0% 87.3%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 74.0 6.47e-01 100.0% 77.4%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 71.0 6.08e-01 100.0% 89.6%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.80 72.0 6.49e-01 100.0% 75.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 71.0 6.23e-01 100.0% 82.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 70.0 5.89e-01 100.0% 67.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 6.06e-01 100.0% 77.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 70.0 5.91e-01 100.0% 78.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 5.95e-01 100.0% 68.2%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 67.0 6.11e-01 100.0% 79.7%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 63.0 5.35e-01 88.1% 88.1%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 66.0 5.48e-01 100.0% 70.5%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.77 68.0 6.29e-01 100.0% 85.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.77 67.0 6.48e-01 100.0% 89.6%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 5.62e-01 100.0% 71.4%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 65.0 6.09e-01 100.0% 96.3%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 5.92e-01 100.0% 82.8%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 63.0 5.73e-01 100.0% 91.7%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 64.0 5.66e-01 100.0% 90.6%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 63.0 5.07e-01 100.0% 61.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 64.0 5.86e-01 100.0% 80.4%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 5.89e-01 100.0% 83.0%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 57.0 4.62e-01 88.1% 80.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 61.0 5.32e-01 100.0% 83.3%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.16e-01 100.0% 85.7%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 5.63e-01 100.0% 80.0%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 56.0 4.80e-01 90.5% 62.0%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 57.0 4.66e-01 92.9% 83.5%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.17e-01 100.0% 75.8%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 57.0 5.00e-01 100.0% 86.8%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.68 55.0 4.35e-01 92.9% 86.8%
2haxA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 49.0 4.95e-01 85.7% 79.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 4.67e-01 100.0% 67.5%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 57.0 4.15e-01 100.0% 37.9%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.67 56.0 4.95e-01 100.0% 72.7%
1smxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 50.0 4.04e-01 88.1% 40.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.66 54.0 4.82e-01 97.6% 76.6%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 4.90e-01 100.0% 86.9%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.66 53.0 4.98e-01 97.6% 87.5%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.07e-01 100.0% 80.0%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 43.0 3.78e-01 90.5% 45.2%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.65 50.0 4.87e-01 92.9% 92.2%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 4.88e-01 100.0% 75.9%
3lhoA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.65 47.0 3.01e-01 83.3% 17.2%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.65 55.0 5.47e-01 97.6% 97.7%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 49.0 4.41e-01 90.5% 73.4%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 51.0 3.12e-01 97.6% 20.1%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.64 51.0 4.88e-01 97.6% 92.3%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.64 50.0 4.76e-01 97.6% 89.3%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 49.0 4.18e-01 88.1% 52.1%
5nahA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 54.0 3.22e-01 100.0% 40.9%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 50.0 4.80e-01 97.6% 94.2%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 4.00e-01 85.7% 85.1%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 50.0 4.51e-01 97.6% 85.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 49.0 4.57e-01 97.6% 91.5%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 52.0 3.11e-01 100.0% 41.6%
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 52.0 3.42e-01 100.0% 49.3%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 49.0 4.70e-01 97.6% 94.1%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 48.0 4.45e-01 92.9% 93.1%
1xovA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 4.46e-01 100.0% 89.4%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.72e-01 100.0% 97.6%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.60 47.0 3.94e-01 100.0% 85.4%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 46.0 4.02e-01 100.0% 81.2%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 2.95e-01 100.0% 37.7%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.59 45.0 3.11e-01 88.1% 56.4%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.60e-01 95.2% 63.0%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 49.0 3.39e-01 100.0% 64.2%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.59 49.0 3.28e-01 100.0% 26.9%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 44.0 2.78e-01 95.2% 42.3%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.58 51.0 3.32e-01 100.0% 26.3%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.58 45.0 3.56e-01 100.0% 72.6%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.51e-01 97.6% 52.6%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.58 46.0 3.72e-01 100.0% 89.7%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 44.0 3.08e-01 100.0% 81.8%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 2.96e-01 100.0% 59.8%
1zswA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 42.0 2.95e-01 85.7% 24.0%
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 2.76e-01 92.9% 28.2%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.53 40.0 3.64e-01 95.2% 92.6%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 41.0 3.82e-01 100.0% 67.2%
1b25A02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.52 41.0 2.79e-01 92.9% 24.2%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998870 4.1.1.483 beta barrels › SH3 › SH3 › SH3 › RRXRR 0.91 80.0 6.18e-01 100.0% 47.1%
4998329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 79.0 7.16e-01 100.0% 72.7%
4998726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 77.0 6.10e-01 100.0% 50.0%
4995901 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 75.0 6.85e-01 100.0% 72.7%
4960540 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 76.0 6.55e-01 100.0% 86.2%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 77.0 6.57e-01 100.0% 73.8%
4091533 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.85 77.0 6.42e-01 100.0% 90.0%
4208181 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.85 75.0 6.49e-01 100.0% 87.7%
3486496 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 77.0 7.02e-01 100.0% 81.8%
3476178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 77.0 5.40e-01 100.0% 37.5%
3475807 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.84 74.0 5.94e-01 100.0% 85.0%
3500406 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.83 74.0 4.25e-01 100.0% 18.9%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 75.0 6.40e-01 100.0% 75.4%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.83 74.0 5.64e-01 100.0% 46.3%
4126578 4.1.1.245 beta barrels › SH3 › SH3 › SH3 › SspH 0.83 76.0 6.70e-01 100.0% 71.2%
4075769 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.83 74.0 6.75e-01 100.0% 81.8%
3419491 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 73.0 6.46e-01 100.0% 83.3%
4571610 4.1.1.245 beta barrels › SH3 › SH3 › SH3 › SspH 0.82 74.0 6.59e-01 100.0% 71.2%
4194385 4.1.1.245 beta barrels › SH3 › SH3 › SH3 › SspH 0.82 74.0 6.60e-01 100.0% 72.9%
3475240 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.82 73.0 6.67e-01 100.0% 89.1%
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.82 73.0 5.75e-01 100.0% 52.9%
3475462 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.82 74.0 5.76e-01 100.0% 57.6%
3850775 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.82 72.0 6.24e-01 100.0% 69.2%
3259547 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 73.0 5.22e-01 100.0% 39.1%
3533770 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.82 71.0 5.30e-01 100.0% 42.9%
4331473 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.81 71.0 5.70e-01 100.0% 51.2%
4844109 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 73.0 6.07e-01 100.0% 60.6%
3706786 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 72.0 5.90e-01 100.0% 62.7%
3558188 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.81 71.0 5.85e-01 100.0% 60.0%
2427475 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 71.0 6.10e-01 100.0% 68.7%
3741878 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 70.0 6.13e-01 100.0% 87.7%
4268386 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 71.0 6.01e-01 100.0% 67.1%
547 4.1.1.49 beta barrels › SH3 › SH3 › SH3 › KorB_C 0.81 73.0 6.66e-01 100.0% 79.6%
3485745 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 72.0 6.38e-01 100.0% 91.7%
3173941 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 69.0 5.28e-01 100.0% 46.0%
3529708 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 71.0 5.84e-01 100.0% 73.3%
3782038 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 70.0 5.30e-01 100.0% 46.0%
4003015 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.80 72.0 6.40e-01 100.0% 91.5%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.80 69.0 5.76e-01 100.0% 62.7%
3421158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 70.0 6.23e-01 100.0% 80.0%
3725260 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 70.0 5.85e-01 97.6% 77.1%
5071741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 69.0 6.19e-01 100.0% 76.7%
3880325 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.80 70.0 5.92e-01 100.0% 78.6%
3451280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 70.0 4.68e-01 100.0% 29.7%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.80 69.0 5.72e-01 100.0% 70.7%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.79 68.0 5.83e-01 100.0% 75.7%
3484007 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 68.0 5.79e-01 100.0% 78.6%
3581336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 71.0 5.12e-01 100.0% 50.0%
3368254 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.78 68.0 6.26e-01 100.0% 87.3%
3300074 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.32e-01 100.0% 85.2%
3342430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 67.0 5.59e-01 100.0% 64.0%
3824346 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 66.0 5.44e-01 100.0% 60.0%
3818428 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.77 66.0 5.55e-01 100.0% 64.0%
3329059 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.77 66.0 6.31e-01 100.0% 96.0%
4001172 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.77 67.0 5.69e-01 100.0% 80.0%
3447770 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.77 57.0 6.09e-01 81.0% 100.0%
3784334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 68.0 6.01e-01 100.0% 73.3%
4275696 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.76 65.0 4.66e-01 100.0% 43.1%
3423337 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.76 65.0 5.33e-01 100.0% 60.0%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 64.0 5.64e-01 100.0% 67.7%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 64.0 4.22e-01 100.0% 24.4%
3703907 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 58.0 5.08e-01 88.1% 98.5%
1031172 4.1.1.113 beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.74 63.0 5.36e-01 100.0% 69.4%
3406663 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 57.0 5.43e-01 88.1% 100.0%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.73 63.0 5.51e-01 100.0% 70.8%
4998113 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.73 63.0 6.24e-01 100.0% 100.0%
4302391 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.72 61.0 5.39e-01 100.0% 76.9%
3737903 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.72 59.0 5.55e-01 100.0% 80.0%
3492557 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.71 59.0 4.62e-01 100.0% 49.0%
3301383 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.71 60.0 5.75e-01 100.0% 90.0%
3300051 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.71 60.0 5.03e-01 100.0% 58.7%
3840076 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 59.0 5.32e-01 97.6% 98.3%
4554867 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 58.0 5.17e-01 100.0% 69.2%
5053906 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 57.0 5.21e-01 100.0% 81.7%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 57.0 4.90e-01 100.0% 69.3%
3786430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.55e-01 100.0% 86.0%
5055172 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.69 57.0 5.34e-01 97.6% 90.9%
4432457 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 58.0 5.00e-01 100.0% 68.6%
3834390 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.26e-01 100.0% 92.0%
1144780 219.1.1.69 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GtgE 0.68 57.0 4.15e-01 100.0% 37.9%
5011920 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.60e-01 100.0% 88.7%
3450200 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.52e-01 100.0% 54.1%
5044391 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 56.0 5.33e-01 95.2% 92.0%
1412633 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 49.0 4.53e-01 88.1% 62.1%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.65 52.0 4.98e-01 100.0% 84.6%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.73e-01 100.0% 78.1%
3609527 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.64 50.0 3.29e-01 97.6% 19.5%
3964664 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.63 49.0 4.36e-01 90.5% 64.7%
4066093 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.63 55.0 3.28e-01 100.0% 39.2%
3549024 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.62 53.0 3.06e-01 100.0% 34.8%
3659855 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.22e-01 100.0% 93.8%
3456358 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 43.0 3.40e-01 81.0% 45.0%
142126 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.59 47.0 3.45e-01 97.6% 62.1%
3403184 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.58 47.0 3.74e-01 100.0% 87.0%
3990208 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 40.0 3.60e-01 85.7% 94.7%
3540588 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.56 44.0 3.01e-01 100.0% 90.8%
5028741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.73e-01 100.0% 78.2%
D3 medium residues 141-180
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.93 84.0 6.83e-01 100.0% 62.0%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.91 82.0 6.75e-01 100.0% 72.5%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.90 80.0 7.52e-01 100.0% 89.6%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.89 79.0 7.45e-01 100.0% 97.9%
3vnxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.89 74.0 4.63e-01 100.0% 19.0%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.87 67.0 6.45e-01 85.0% 95.7%
2yb5F01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 73.0 5.64e-01 100.0% 46.5%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.82 69.0 5.85e-01 100.0% 64.8%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.82 72.0 5.57e-01 100.0% 55.2%
1v4gA01 6.10.140.800 Special › Helix non-globular › Helix Hairpins › 0.80 68.0 5.77e-01 100.0% 60.9%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 68.0 5.92e-01 100.0% 71.0%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.78 67.0 5.13e-01 100.0% 44.7%
1cpyA02 1.10.287.410 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 62.0 5.37e-01 100.0% 61.1%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 61.0 5.35e-01 90.0% 95.2%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 63.0 5.49e-01 100.0% 58.8%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 60.0 5.75e-01 95.0% 84.3%
6he1B01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.77 68.0 5.79e-01 100.0% 70.3%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 65.0 5.54e-01 100.0% 100.0%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 59.0 5.00e-01 100.0% 56.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.72 59.0 3.98e-01 90.0% 92.4%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 61.0 5.48e-01 100.0% 74.6%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 62.0 5.34e-01 100.0% 85.9%
6ldkA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.71 59.0 4.01e-01 100.0% 23.3%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.70 59.0 5.00e-01 100.0% 56.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 58.0 5.26e-01 100.0% 81.0%
3eo8A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.69 63.0 3.88e-01 100.0% 21.9%
4q5qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 53.0 4.10e-01 100.0% 39.0%
4lqqB00 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.65 54.0 3.78e-01 100.0% 41.8%
2yxyA01 1.10.287.880 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain 0.65 55.0 5.20e-01 97.5% 84.0%
4hb1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.65 51.0 5.00e-01 100.0% 88.6%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.65 50.0 4.72e-01 100.0% 76.8%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.64 54.0 3.61e-01 100.0% 23.3%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.63 45.0 4.40e-01 90.0% 74.5%
2a26B01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.62 51.0 4.97e-01 100.0% 93.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973019 159.1.1.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 0.94 84.0 5.98e-01 100.0% 36.4%
4663376 3593.1.1.1 a+b complex topology › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › CagA_N 0.94 84.0 4.75e-01 100.0% 10.3%
3613978 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.91 81.0 4.76e-01 100.0% 14.5%
4955780 3939.1.1.387 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › DUF4349 0.89 79.0 6.69e-01 100.0% 72.3%
4129936 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.88 78.0 5.84e-01 100.0% 49.5%
3451533 192.29.1.237 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF3755 0.86 74.0 5.93e-01 100.0% 62.5%
4989643 7566.1.1.0 a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain 0.85 74.0 4.83e-01 100.0% 23.5%
4067599 192.17.1.22 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › COX3 0.82 68.0 5.55e-01 100.0% 50.0%
4936472 138.1.1.0 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.81 69.0 5.13e-01 100.0% 41.0%
4152566 4274.1.1.1 extended segments › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › MalF_N_TM 0.80 67.0 6.18e-01 100.0% 80.0%
3940480 3652.1.1.0 alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 0.78 67.0 6.27e-01 100.0% 80.0%
4832459 3291.1.1.54 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CC2D1A-B_DM14 0.70 54.0 4.92e-01 100.0% 67.7%
5053329 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 53.0 4.06e-01 100.0% 36.7%
4778768 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.65 51.0 5.00e-01 100.0% 88.6%