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OX241575.1__CAH9016878.1__VP120E341_P0092__00092

Bact-Vir

OX241575.1__CAH9016878.1__VP120E341_P0092__00092

Identity

Accession:
OX241575 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_120E34-1

TaxID: 2963164

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-79
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 49.0 5.21e-01 100.0% 72.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.45e-01 100.0% 83.9%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.71 49.0 4.32e-01 100.0% 48.6%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.61e-01 100.0% 93.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 4.85e-01 100.0% 76.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 3.61e-01 100.0% 39.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.22e-01 100.0% 80.0%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.59 41.0 4.23e-01 94.6% 76.8%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 49.0 4.37e-01 100.0% 65.4%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.57 47.0 4.56e-01 91.9% 94.0%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 50.0 3.51e-01 100.0% 35.1%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.27e-01 100.0% 83.6%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.55 48.0 4.50e-01 100.0% 80.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 34.0 3.60e-01 81.1% 72.6%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 4.24e-01 94.6% 86.4%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.81e-01 93.2% 97.6%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.96e-01 86.5% 100.0%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.52 43.0 3.74e-01 91.9% 64.7%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 39.0 3.51e-01 87.8% 57.5%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.82e-01 94.6% 80.7%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.51 35.0 2.93e-01 83.8% 40.3%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 40.0 2.71e-01 87.8% 93.3%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 41.0 3.71e-01 89.2% 83.7%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 40.0 3.25e-01 85.1% 89.6%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 39.0 3.36e-01 86.5% 100.0%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 36.0 3.75e-01 82.4% 83.6%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 37.0 4.04e-01 78.4% 100.0%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.51 40.0 4.17e-01 86.5% 97.0%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 37.0 3.43e-01 81.1% 82.0%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 31.0 3.48e-01 89.2% 88.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4138563 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 53.0 5.64e-01 100.0% 75.4%
4941620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 52.0 5.78e-01 100.0% 81.7%
5058103 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 52.0 5.41e-01 100.0% 72.1%
5029655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 51.0 5.62e-01 100.0% 81.7%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 53.0 5.28e-01 100.0% 72.0%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.75 51.0 5.42e-01 100.0% 80.0%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.74 49.0 5.40e-01 100.0% 83.3%
1779210 2.1.1.112 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNApolII_N 0.73 39.0 5.04e-01 83.8% 92.9%
4427477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 4.61e-01 100.0% 55.8%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.15e-01 100.0% 75.7%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 50.0 4.70e-01 100.0% 65.6%
591 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.66 48.0 4.83e-01 100.0% 75.0%
3511007 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 50.0 4.21e-01 100.0% 50.0%
3983195 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.65 37.0 4.60e-01 91.9% 93.3%
3720660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 4.87e-01 100.0% 77.3%
3932647 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 47.0 4.47e-01 100.0% 65.9%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.65 45.0 4.33e-01 100.0% 63.5%
4185547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.02e-01 100.0% 80.0%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.61 50.0 5.16e-01 100.0% 100.0%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.61 47.0 4.13e-01 100.0% 56.4%
3615426 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 47.0 3.69e-01 100.0% 41.3%
3802464 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 46.0 2.89e-01 83.8% 81.0%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 50.0 4.99e-01 100.0% 89.3%
4216425 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.58 41.0 3.97e-01 81.1% 65.5%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.58 43.0 3.86e-01 100.0% 55.5%
4040016 814.1.1.2 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.58 47.0 3.88e-01 93.2% 89.7%
4108015 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 44.0 3.68e-01 82.4% 89.9%
4104199 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.57 43.0 3.96e-01 81.1% 87.4%
3514380 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.56 50.0 3.28e-01 100.0% 29.8%
3550809 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 41.0 2.62e-01 79.7% 87.5%
3905905 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.55 41.0 2.66e-01 78.4% 93.0%
4459163 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 44.0 3.63e-01 83.8% 90.4%
3907293 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 45.0 4.10e-01 93.2% 87.6%
3914585 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 45.0 4.09e-01 93.2% 87.6%
1144827 4.1.1.79 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3601 0.55 48.0 4.52e-01 100.0% 80.9%
3514663 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 39.0 3.92e-01 95.9% 73.3%
3544563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.14e-01 95.9% 89.5%
5054047 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 43.0 4.33e-01 95.9% 84.0%
3627778 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.53 45.0 4.08e-01 95.9% 85.0%
3976146 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 45.0 3.04e-01 93.2% 30.9%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.52 31.0 3.48e-01 79.7% 78.2%
3491036 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.52 41.0 3.90e-01 86.5% 87.6%
4980209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.37e-01 89.2% 96.1%
5051142 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 43.0 3.50e-01 93.2% 64.1%
5072371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.88e-01 91.9% 85.0%
3700961 2.1.1.27 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.52 44.0 3.58e-01 97.3% 86.6%
5021659 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 44.0 4.12e-01 91.9% 98.9%
3265916 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.51 41.0 2.73e-01 90.5% 33.2%
3839740 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 43.0 3.57e-01 95.9% 83.6%
3981308 11.2.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › IcmF_C 0.51 39.0 3.49e-01 82.4% 97.1%
4430771 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 43.0 3.42e-01 91.9% 82.1%
3188039 2.1.1.27 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.51 43.0 3.52e-01 97.3% 91.9%
5045292 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 44.0 3.93e-01 97.3% 75.2%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.50 42.0 3.71e-01 91.9% 92.7%
3927128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 41.0 3.63e-01 95.9% 81.7%
3974126 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.50 36.0 2.77e-01 79.7% 59.8%
D2 medium residues 86-141
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.71 48.0 3.17e-01 71.4% 17.2%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.68 49.0 3.73e-01 78.6% 66.7%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 50.0 4.34e-01 87.5% 81.5%
2c00A03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.65 50.0 4.73e-01 85.7% 89.7%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.64 44.0 3.38e-01 100.0% 29.9%
2x49A02 3.40.5.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › FHIPEP family, domain 2 0.64 39.0 4.14e-01 92.9% 70.8%
3p0jA03 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.61 47.0 4.01e-01 85.7% 72.6%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.61 42.0 4.27e-01 98.2% 74.5%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.61 42.0 4.00e-01 98.2% 61.2%
1a9xA07 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 45.0 4.56e-01 83.9% 81.8%
6zq3A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 50.0 3.46e-01 96.4% 75.0%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.60 41.0 3.89e-01 98.2% 59.4%
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.60 49.0 4.37e-01 96.4% 74.7%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 44.0 4.42e-01 82.1% 94.9%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 46.0 4.30e-01 94.6% 88.6%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 47.0 4.10e-01 98.2% 81.6%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 47.0 4.21e-01 94.6% 86.7%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.56 43.0 3.95e-01 91.1% 75.0%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 43.0 3.43e-01 89.3% 69.2%
3kalB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.55 41.0 4.09e-01 89.3% 94.9%
2rbkA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.54 42.0 3.60e-01 91.1% 92.1%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.60e-01 87.5% 92.4%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 3.74e-01 98.2% 97.1%
1cbfA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 41.0 3.43e-01 92.9% 91.7%
1z2nX03 3.30.1490.220 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.54 40.0 3.48e-01 89.3% 54.7%
5eqjB01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 41.0 3.83e-01 85.7% 93.0%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 42.0 3.19e-01 94.6% 80.4%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.52 35.0 3.18e-01 73.2% 83.0%
2c6uA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 42.0 3.45e-01 100.0% 99.2%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.16e-01 87.5% 59.7%
2xzm500 3.30.1740.20 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 0.51 28.0 2.35e-01 83.9% 27.6%
4ye4L01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.22e-01 87.5% 88.5%
4a37A01 2.60.40.3120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.33e-01 92.9% 92.9%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 35.0 2.87e-01 73.2% 75.8%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.50 39.0 3.35e-01 100.0% 51.0%
1zw8A01 6.10.140.370 Special › Helix non-globular › Helix Hairpins › 0.50 35.0 3.63e-01 75.0% 98.0%
3gr3A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 36.0 2.48e-01 80.4% 52.2%
3vtiA03 3.90.870.40 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.50 38.0 3.13e-01 89.3% 86.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3204956 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 54.0 4.37e-01 96.4% 80.0%
4097380 325.1.1.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › GARS_C 0.61 47.0 3.53e-01 89.3% 39.4%
4944426 3740.1.1.5 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › Fer4_22 0.60 46.0 3.04e-01 87.5% 46.9%
2777647 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.60 49.0 3.54e-01 96.4% 68.3%
3717753 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 4.21e-01 92.9% 91.1%
4937548 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.60 42.0 4.24e-01 96.4% 76.4%
2879452 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.59 49.0 4.40e-01 98.2% 88.1%
3817039 2003.1.5.55 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.59 49.0 3.22e-01 100.0% 20.7%
4103307 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.59 48.0 4.35e-01 98.2% 83.5%
3945048 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.59 48.0 4.32e-01 98.2% 83.5%
3507141 11.1.1.550 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 0.58 47.0 3.90e-01 96.4% 59.1%
3221138 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 46.0 4.09e-01 91.1% 88.2%
3619962 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.58 45.0 4.03e-01 89.3% 89.4%
3588312 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.58 48.0 4.24e-01 98.2% 80.7%
3575279 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 44.0 4.02e-01 87.5% 96.2%
3972149 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.58 46.0 4.20e-01 94.6% 90.0%
3659057 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.57 45.0 4.61e-01 92.9% 98.2%
4991 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.57 45.0 4.05e-01 94.6% 70.5%
4928815 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.11e-01 83.9% 92.3%
4568147 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.57 46.0 4.15e-01 100.0% 80.9%
4930538 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.56 47.0 3.01e-01 100.0% 70.5%
4990 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.56 45.0 4.10e-01 98.2% 86.9%
3622068 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.56 43.0 3.80e-01 89.3% 83.3%
3516325 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.72e-01 83.9% 81.2%
5022617 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.55 43.0 3.71e-01 92.9% 94.0%
5000173 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.55 45.0 3.05e-01 100.0% 87.7%
None — 0.54 44.0 3.08e-01 100.0% 71.6%
3630462 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 37.0 2.89e-01 75.0% 31.4%
3980132 823.1.1.1 ↗ a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.53 38.0 3.86e-01 80.4% 83.6%
3265394 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.52 37.0 2.31e-01 80.4% 11.6%
4188115 109.4.1.1310 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.52 38.0 2.14e-01 82.1% 8.1%
4013512 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.52 36.0 3.26e-01 91.1% 53.3%
None — 0.51 44.0 2.48e-01 100.0% 23.3%
5077868 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.76e-01 94.6% 72.3%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 36.0 2.84e-01 78.6% 34.8%
4997643 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 38.0 2.64e-01 83.9% 83.8%
134337 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.50 36.0 2.48e-01 80.4% 52.2%
D3 medium residues 145-176
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.79 66.0 4.92e-01 100.0% 45.3%
7zs9F01 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.68 52.0 3.86e-01 100.0% 40.0%
2l37A00 6.10.250.890 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 46.0 4.44e-01 100.0% 69.8%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.62 43.0 3.31e-01 71.9% 76.3%
1tvlA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.59 49.0 2.75e-01 96.9% 26.9%
2i6hA01 1.20.58.320 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › TPR-like 0.57 46.0 3.49e-01 93.8% 42.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3231907 2006.1.4.39 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › C_tripleX 0.74 60.0 5.51e-01 100.0% 80.0%
3469624 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.73 59.0 4.64e-01 100.0% 45.3%
5046599 1045.1.1.0 ↗ alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 0.67 47.0 4.67e-01 100.0% 71.1%
3748305 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 49.0 4.54e-01 100.0% 66.7%
5059373 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.58 45.0 3.06e-01 96.9% 24.4%