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OX241576.1__CAH9017305.1__VP193E371_P0181__00181

Bact-Vir

OX241576.1__CAH9017305.1__VP193E371_P0181__00181

Identity

Accession:
OX241576 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_193E37-1

TaxID: 2963175

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.61 50.0 4.19e-01 100.0% 95.1%
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.87e-01 92.3% 88.9%
7k7jA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.52e-01 92.3% 93.5%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.56e-01 92.3% 85.4%
5c86A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.43e-01 92.3% 83.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 3.55e-01 100.0% 95.0%
2i0kA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 41.0 3.30e-01 98.1% 95.2%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 37.0 3.62e-01 80.8% 70.7%
1ihjA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 41.0 3.59e-01 100.0% 93.6%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.37e-01 94.2% 84.6%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.51 40.0 3.51e-01 96.2% 80.2%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.51 39.0 3.29e-01 92.3% 77.4%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 38.0 3.15e-01 88.5% 73.9%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.53e-01 90.4% 67.9%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 39.0 2.97e-01 88.5% 43.8%
1x5lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.37e-01 88.5% 68.2%
1vlrA01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.50 37.0 3.16e-01 84.6% 92.9%
1oaoC04 3.40.970.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › Carbon monoxide dehydrogenase alpha subunit. Chain D, domain 4 0.50 36.0 3.21e-01 84.6% 80.2%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.32e-01 88.5% 88.6%
3k5iA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.50 40.0 3.76e-01 100.0% 91.4%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.35e-01 92.3% 87.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3573560 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 56.0 4.65e-01 96.2% 85.0%
3312666 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 51.0 4.69e-01 84.6% 95.7%
3488490 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 53.0 4.34e-01 96.2% 84.8%
3339376 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 54.0 4.26e-01 100.0% 73.0%
3721305 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.62 42.0 3.46e-01 73.1% 73.8%
3932819 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 48.0 3.89e-01 98.1% 94.8%
3715940 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 47.0 3.43e-01 98.1% 38.8%
4537757 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 44.0 3.55e-01 94.2% 82.5%
3823785 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 45.0 3.00e-01 98.1% 26.2%
4012802 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 45.0 3.68e-01 98.1% 91.8%
4929404 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 45.0 3.58e-01 90.4% 72.4%
3283168 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.55 43.0 2.86e-01 98.1% 41.9%
4936914 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 44.0 3.70e-01 100.0% 69.5%
3812071 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.55 41.0 3.28e-01 84.6% 67.0%
3797683 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.43e-01 94.2% 75.2%
3790333 11.1.1.1009 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26432 0.54 42.0 3.00e-01 92.3% 51.1%
3754848 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.42e-01 100.0% 52.6%
4295323 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 43.0 3.50e-01 92.3% 78.1%
3630549 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.53 42.0 3.40e-01 98.1% 52.4%
3252988 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.53 39.0 2.44e-01 80.8% 88.6%
3908752 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.53 41.0 3.19e-01 88.5% 80.8%
3222823 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.53 42.0 2.98e-01 96.2% 41.0%
3554235 4261.1.1.2 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.52 40.0 3.29e-01 100.0% 49.2%
3708173 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 41.0 3.14e-01 96.2% 69.7%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.52 37.0 3.36e-01 78.8% 90.7%
3561033 3569.2.1.0 ↗ extended segments › Epidermal growth factor receptor transmembrane-juxtamembrane segment-like › Insulin receptor transmembrane segment › Insulin receptor transmembrane segment 0.51 40.0 3.05e-01 98.1% 44.4%
3364575 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 39.0 2.87e-01 90.4% 44.5%
4591842 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 40.0 3.34e-01 94.2% 72.4%
3607994 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 39.0 2.61e-01 92.3% 46.7%
3289882 10.12.1.54 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.50 41.0 2.78e-01 100.0% 42.7%