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OX463805.1__CAI9187590.1__X__00078

Bact-Vir

OX463805.1__CAI9187590.1__X__00078

Identity

Accession:
OX463805 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Kochikohdavirus› Enterococcus_phage_Sw5

TaxID: 2950724

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-166
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D10-175
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.67 28.0 3.25e-01 89.4% 52.4%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.64 30.0 3.46e-01 92.5% 56.9%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.58 35.0 4.40e-01 95.0% 100.0%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 36.0 3.59e-01 98.8% 61.4%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 26.0 2.72e-01 91.9% 47.2%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.92e-01 98.1% 73.8%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 40.0 4.03e-01 99.4% 76.2%
5byuA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 35.0 3.93e-01 100.0% 83.6%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 38.0 3.87e-01 95.7% 76.1%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 37.0 3.82e-01 96.9% 76.2%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 35.0 3.74e-01 93.2% 76.2%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 37.0 4.24e-01 91.3% 100.0%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 32.0 3.71e-01 99.4% 85.0%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 37.0 3.85e-01 99.4% 78.5%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 25.0 3.28e-01 77.0% 78.9%
5optY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 31.0 3.48e-01 75.8% 77.2%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 35.0 3.62e-01 98.1% 74.0%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 35.0 3.59e-01 98.1% 72.0%
4dkmA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 42.0 3.82e-01 97.5% 67.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4644143 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.70 27.0 3.06e-01 90.7% 45.4%
4981385 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.63 29.0 3.35e-01 91.9% 58.3%
4559690 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 39.0 4.00e-01 99.4% 75.0%
3966459 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 25.0 2.74e-01 91.9% 48.6%
4449665 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 38.0 3.90e-01 99.4% 75.6%
5073891 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 25.0 3.19e-01 87.6% 75.0%
4050475 331.9.1.1 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Alpha_adaptin_C 0.52 31.0 3.56e-01 100.0% 78.0%
5082716 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 30.0 3.75e-01 92.5% 94.0%
5038083 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.51 30.0 3.44e-01 100.0% 76.6%
840 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 36.0 3.53e-01 96.9% 66.9%
D2 high residues 179-284
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D184-294
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 49.0 5.42e-01 85.8% 79.1%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 52.0 5.17e-01 83.0% 67.9%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 50.0 5.44e-01 82.1% 81.6%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.74 57.0 5.77e-01 85.8% 81.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.70 60.0 5.59e-01 92.5% 74.4%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 48.0 5.08e-01 82.1% 78.9%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 48.0 4.96e-01 85.8% 77.0%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 50.0 4.92e-01 77.4% 73.0%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 51.0 5.20e-01 83.0% 81.7%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.66 40.0 3.59e-01 90.6% 46.0%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.63 31.0 3.25e-01 90.6% 51.0%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 4.74e-01 83.0% 77.8%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 4.90e-01 85.8% 79.1%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.54e-01 82.1% 76.2%
5itqA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.60 48.0 4.56e-01 89.6% 89.4%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.97e-01 83.0% 56.9%
2ej8B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.41e-01 85.8% 79.4%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 42.0 3.80e-01 79.2% 93.2%
2n93A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.72e-01 78.3% 93.8%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.13e-01 100.0% 85.3%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 38.0 3.55e-01 75.5% 80.8%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.52 38.0 4.16e-01 100.0% 97.6%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.79e-01 97.2% 98.6%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.51 40.0 3.50e-01 83.0% 82.8%
2bonA02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 41.0 3.75e-01 89.6% 96.0%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 40.0 3.01e-01 84.0% 87.4%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 38.0 2.63e-01 79.2% 36.6%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.50 35.0 3.29e-01 72.6% 74.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2712015 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.77 50.0 5.61e-01 85.8% 85.2%
3742330 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.77 52.0 5.07e-01 83.0% 63.5%
3699518 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.77 51.0 4.84e-01 83.0% 57.6%
3591463 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.77 51.0 4.99e-01 83.0% 62.6%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.77 58.0 6.04e-01 83.0% 84.0%
3890418 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.76 58.0 5.90e-01 85.8% 81.0%
3627615 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.75 53.0 4.68e-01 85.8% 53.1%
3801512 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 52.0 5.03e-01 85.8% 64.2%
3574847 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.74 52.0 4.66e-01 85.8% 53.1%
3743938 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 53.0 4.90e-01 83.0% 61.5%
4988664 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 48.0 5.56e-01 85.8% 96.0%
3411942 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.72 51.0 4.72e-01 83.0% 59.2%
4999602 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 50.0 5.29e-01 85.8% 80.0%
4027872 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 49.0 5.21e-01 82.1% 78.9%
3253063 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.71 49.0 4.81e-01 83.0% 65.2%
3531579 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.71 48.0 4.21e-01 83.0% 47.7%
4943079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 51.0 4.46e-01 83.0% 51.6%
3931704 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.70 52.0 5.13e-01 85.8% 73.6%
3899369 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 47.0 4.20e-01 83.0% 49.3%
169967 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.69 61.0 5.60e-01 94.3% 74.6%
3785371 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 54.0 4.98e-01 83.0% 64.4%
3227023 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 53.0 4.37e-01 85.8% 46.5%
3472026 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.69 51.0 4.93e-01 85.8% 68.3%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.68 50.0 5.09e-01 83.0% 77.1%
3171728 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 54.0 4.80e-01 83.0% 65.5%
4158830 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.67 51.0 4.74e-01 85.8% 63.8%
4240841 220.1.1.190 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 0.67 53.0 4.93e-01 83.0% 76.9%
3842576 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.67 49.0 4.75e-01 82.1% 68.3%
3458058 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.67 49.0 4.68e-01 81.1% 65.6%
3679884 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 52.0 5.02e-01 83.0% 80.0%
3791314 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.66 50.0 4.65e-01 83.0% 63.0%
185264 222.1.1.19 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlgA_HD-like 0.66 40.0 4.84e-01 92.5% 92.8%
3936376 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 4.89e-01 81.1% 80.0%
3267845 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.65 48.0 4.74e-01 83.0% 71.3%
3702987 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.65 51.0 3.83e-01 85.8% 35.5%
3269549 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 48.0 4.22e-01 83.0% 53.5%
3245139 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.64 46.0 4.00e-01 83.0% 50.3%
3924744 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.64 49.0 4.46e-01 83.0% 61.4%
5081087 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 5.13e-01 85.8% 82.7%
3173653 220.1.1.190 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 0.63 51.0 5.06e-01 85.8% 81.8%
3166548 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.63 51.0 4.84e-01 85.8% 72.8%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.63 45.0 4.70e-01 83.0% 80.0%
4344687 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.62 49.0 4.92e-01 82.1% 84.8%
3939687 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.62 47.0 4.86e-01 82.1% 85.0%
3922234 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 4.41e-01 83.0% 70.4%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.61 48.0 4.72e-01 83.0% 77.4%
3412704 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.61 50.0 4.20e-01 85.8% 77.1%
4953970 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 4.71e-01 85.8% 75.8%
4218853 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.59 46.0 4.48e-01 85.8% 75.7%
4488000 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 4.49e-01 85.8% 75.7%
3960565 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.52 36.0 2.57e-01 70.8% 86.2%
6883 223.5.1.1 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like › YNR034W-A-like 0.52 37.0 3.89e-01 100.0% 82.7%
4030723 5.1.4.91 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VID27 0.52 37.0 2.46e-01 73.6% 95.6%
3623755 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.51 37.0 3.64e-01 83.0% 68.7%
3244738 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.51 38.0 4.05e-01 84.0% 86.3%
3506182 5.1.5.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.51 38.0 2.64e-01 79.2% 99.2%
4026437 5.1.3.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.51 38.0 2.63e-01 77.4% 98.8%
3291210 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.51 38.0 3.47e-01 80.2% 79.3%
4079710 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.50 39.0 3.49e-01 84.0% 81.9%