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OX463805.1__CAI9187667.1__X__00148

Bact-Vir

OX463805.1__CAI9187667.1__X__00148

Identity

Accession:
OX463805 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Kochikohdavirus› Enterococcus_phage_Sw5

TaxID: 2950724

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-108
PDB
Domain cluster: rep: NC_070924.1__YP_010664748.1__PQB26_gp22__00022__D43-100
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07852.17 best DUF1642 49.7 7.80e-13 100.0% 45.6%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 49.0 5.16e-01 98.3% 86.3%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.63 48.0 4.99e-01 98.3% 98.0%
3mzkB03 1.20.58.940 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 41.0 3.87e-01 94.8% 55.7%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.60 50.0 4.20e-01 98.3% 92.6%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.60 49.0 4.65e-01 94.8% 76.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 49.0 4.48e-01 98.3% 70.5%
2cmpA00 1.10.10.1400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif 0.55 46.0 4.71e-01 93.1% 96.4%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 42.0 3.44e-01 98.3% 44.3%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 44.0 3.73e-01 94.8% 54.4%
3b0xA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.53 42.0 3.74e-01 87.9% 80.5%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 4.07e-01 93.1% 91.3%
7n1nB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 37.0 3.63e-01 82.8% 68.3%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 40.0 4.26e-01 94.8% 100.0%
7ahdC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 36.0 2.45e-01 81.0% 17.8%
3fnrA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.51 40.0 3.16e-01 91.4% 51.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932988 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 48.0 5.00e-01 96.6% 76.4%
3925603 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 48.0 5.13e-01 96.6% 86.0%
3373148 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 49.0 4.86e-01 98.3% 76.7%
3184342 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 52.0 5.19e-01 98.3% 90.0%
3597464 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.76e-01 98.3% 80.0%
3786618 101.1.1.201 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Bot1p 0.61 44.0 3.51e-01 96.6% 36.3%
4280807 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.60 42.0 4.29e-01 94.8% 78.2%
4275626 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.60 50.0 3.54e-01 93.1% 35.0%
3753093 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.60 41.0 4.03e-01 96.6% 66.2%
4937678 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.57 49.0 3.03e-01 100.0% 20.6%
4990528 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 43.0 3.88e-01 94.8% 60.0%
4969225 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.54 42.0 3.61e-01 94.8% 50.0%
4024264 4016.1.1.1 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.53 42.0 3.37e-01 98.3% 41.5%
3482273 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.53 39.0 3.30e-01 84.5% 86.2%
4944726 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 44.0 4.44e-01 94.8% 91.7%
4944862 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 44.0 4.01e-01 94.8% 70.0%
5064701 101.1.2.879 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF134 0.52 45.0 4.06e-01 96.6% 71.2%
4262428 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.52 42.0 2.72e-01 96.6% 64.5%
4061849 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.51 37.0 2.98e-01 75.9% 91.8%
4534822 101.1.1.107 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.51 44.0 4.09e-01 98.3% 76.0%
D2 high residues 114-167
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 41.0 4.09e-01 72.2% 79.3%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.60 38.0 4.16e-01 96.3% 85.4%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.32e-01 79.6% 63.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.31e-01 100.0% 93.6%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 43.0 3.61e-01 100.0% 94.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 4.32e-01 79.6% 84.0%
3581336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.07e-01 92.6% 83.6%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.60 40.0 3.19e-01 70.4% 95.7%
3390253 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 46.0 4.19e-01 87.0% 94.7%
4269264 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.58 37.0 4.01e-01 98.1% 77.8%
4384294 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.58 37.0 4.10e-01 98.1% 87.5%
4132516 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.56 39.0 3.50e-01 74.1% 82.5%
5053567 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.55 35.0 3.40e-01 98.1% 55.4%
3387924 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.37e-01 77.8% 95.8%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.54 39.0 2.86e-01 81.5% 32.6%
3908665 4.1.1.227 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.52 40.0 3.53e-01 92.6% 91.6%
3846709 109.4.1.2384 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPG48, TPR_AP5Z1 0.52 39.0 2.46e-01 85.2% 29.1%