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OY639338.1__CAJ1038993.1__LLOFRUDD_00012__00012

Bact-Vir

OY639338.1__CAJ1038993.1__LLOFRUDD_00012__00012

Identity

Accession:
OY639338 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Henuseptimavirus› Klebsiella_phage_vB_KppS-Samwise

TaxID: 2762815

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-97
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 49.0 5.25e-01 75.7% 80.0%
3p5nA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.71 56.0 4.33e-01 86.5% 67.9%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.71 53.0 4.70e-01 78.4% 68.3%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.71 55.0 4.92e-01 85.1% 63.2%
3efoB01 1.20.120.730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain 0.71 59.0 4.69e-01 91.9% 64.2%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.21e-01 75.7% 54.9%
3egoA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.67 47.0 3.99e-01 73.0% 56.2%
1sxjC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.66 45.0 4.13e-01 70.3% 98.9%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.64 53.0 5.33e-01 95.9% 94.8%
3fdqA01 1.20.120.1030 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain 0.64 54.0 4.64e-01 94.6% 73.0%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.64 56.0 4.66e-01 100.0% 75.9%
1sxjB03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.64 51.0 4.82e-01 90.5% 93.5%
1iqpA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.63 51.0 4.75e-01 90.5% 93.6%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 42.0 4.28e-01 100.0% 71.2%
2cdqA02 1.20.120.1320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain 0.62 52.0 4.82e-01 97.3% 90.7%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 45.0 3.89e-01 75.7% 57.9%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 43.0 3.64e-01 74.3% 53.7%
1wmwB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.62 45.0 2.97e-01 78.4% 42.0%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.61 50.0 4.89e-01 91.9% 89.2%
3nhiA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.61 48.0 3.89e-01 86.5% 77.2%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.59 48.0 4.77e-01 86.5% 96.1%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.23e-01 82.4% 87.4%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 37.0 4.30e-01 78.4% 100.0%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.57 48.0 3.77e-01 98.6% 65.5%
3vwaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 51.0 4.11e-01 100.0% 51.7%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 39.0 4.34e-01 78.4% 96.4%
3cz6A01 1.20.120.1480 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 41.0 3.77e-01 95.9% 58.7%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.55 42.0 3.71e-01 100.0% 56.1%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 39.0 3.65e-01 75.7% 70.2%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 44.0 3.69e-01 100.0% 51.1%
1r3dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 47.0 3.31e-01 100.0% 33.1%
1k87A02 1.10.2060.10 Mainly Alpha › Orthogonal Bundle › PutA proline dehydrogenase (PRODH), domain 2 › PutA proline dehydrogenase (PRODH), domain 2 0.54 47.0 4.17e-01 98.6% 71.6%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 39.0 3.85e-01 78.4% 76.9%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 40.0 3.35e-01 85.1% 96.6%
2acxA01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.53 44.0 3.35e-01 98.6% 40.5%
3amjB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 47.0 3.43e-01 97.3% 83.4%
6j3eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 33.0 2.73e-01 90.5% 30.9%
1r4wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 41.0 3.15e-01 91.9% 56.7%
3ibtA02 1.10.210.20 Mainly Alpha › Orthogonal Bundle › Uteroglobin › 0.51 40.0 4.17e-01 91.9% 94.2%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4461553 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.79 69.0 5.65e-01 97.3% 56.3%
3262554 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.74 60.0 5.99e-01 87.8% 94.7%
5009729 1030.1.1.0 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.73 64.0 5.57e-01 100.0% 67.8%
4068026 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.73 65.0 4.85e-01 100.0% 57.8%
4380725 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 49.0 4.93e-01 74.3% 69.3%
4294975 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.72 64.0 4.85e-01 100.0% 43.3%
4440435 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.72 65.0 4.94e-01 100.0% 63.5%
4165565 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.71 63.0 4.77e-01 100.0% 43.9%
4192201 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.71 63.0 4.81e-01 100.0% 61.1%
4665460 109.4.1.464 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-T 0.71 58.0 4.03e-01 90.5% 34.8%
4559208 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.69 62.0 4.68e-01 100.0% 60.3%
4599957 101.8.1.0 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases 0.69 55.0 4.31e-01 89.2% 49.1%
4536901 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.68 59.0 4.60e-01 100.0% 63.5%
3873232 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.68 47.0 4.57e-01 79.7% 66.3%
3784009 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.67 46.0 4.22e-01 70.3% 97.9%
3216068 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 52.0 5.15e-01 83.8% 98.7%
3840063 1156.1.1.1 ↗ alpha complex topology › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124_C 0.67 60.0 4.76e-01 100.0% 66.7%
4193771 109.4.1.464 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-T 0.67 57.0 4.01e-01 94.6% 36.6%
5046177 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.65 50.0 4.75e-01 85.1% 91.1%
3963650 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 40.0 4.62e-01 83.8% 92.0%
4252460 2002.1.1.56 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.64 53.0 3.50e-01 93.2% 22.2%
3914408 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.64 52.0 4.85e-01 94.6% 90.9%
4812867 6164.1.1.4 ↗ alpha bundles › Bestrophin › Bestrophin › Bestrophin › Bestrophin_2 0.62 44.0 3.08e-01 73.0% 37.1%
5042653 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.62 50.0 4.72e-01 91.9% 91.6%
4162034 192.7.1.3 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.62 42.0 3.98e-01 70.3% 82.2%
3872947 633.6.1.43 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › PF28139 0.62 43.0 3.51e-01 73.0% 63.4%
3593369 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.62 50.0 4.54e-01 93.2% 85.7%
3449672 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.61 48.0 4.51e-01 89.2% 89.5%
5048198 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.61 46.0 4.58e-01 82.4% 92.0%
4504903 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.60 48.0 4.48e-01 90.5% 90.5%
4955370 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 44.0 4.32e-01 78.4% 97.5%
3738696 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.59 45.0 4.26e-01 85.1% 87.4%
5021741 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 49.0 5.02e-01 100.0% 100.0%
3668063 150.1.1.89 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TRAM_LAG1_CLN8 0.59 50.0 3.60e-01 97.3% 78.8%
3941718 185.1.2.0 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Protein HNS-dependent expression A HdeA 0.59 43.0 4.46e-01 81.1% 98.6%
4023958 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.59 46.0 4.35e-01 90.5% 91.6%
4404513 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 39.0 3.93e-01 70.3% 68.0%
3783238 5041.1.1.15 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › Tmemb_170 0.58 44.0 3.87e-01 82.4% 97.4%
185069 632.3.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Paramyx_P_V_C 0.58 37.0 4.30e-01 78.4% 100.0%
3727621 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 39.0 3.88e-01 71.6% 71.2%
4033697 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.57 45.0 4.00e-01 85.1% 94.3%
3443424 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 41.0 2.67e-01 77.0% 21.8%
3080979 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.56 45.0 4.19e-01 93.2% 89.0%
1227109 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.56 50.0 3.45e-01 100.0% 33.9%
4675001 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 47.0 3.53e-01 100.0% 83.9%
None — 0.54 47.0 3.31e-01 100.0% 33.1%
1041203 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.54 42.0 2.83e-01 85.1% 22.2%
3384796 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.51 38.0 3.50e-01 81.1% 72.0%
3678569 109.4.1.2687 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28645 0.50 43.0 2.87e-01 93.2% 57.5%