←Back to structures
OY731444.1__CAJ1887931.1__AUSP0021_00008__00008
Bact-VirOY731444.1__CAJ1887931.1__AUSP0021_00008__00008
Identity
- Accession:
- OY731444 ↗
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Cluster
View cluster (83 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-29_142-283
Domain cluster:
rep: MN698246.1__QGZ18180.1__HTVC112P_gp03__00003__D120-243
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12684.14 best | DUF3799 | 37.2 | 3.90e-09 | 90.6% | 47.2% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.80 | 68.0 | 6.19e-01 | 87.7% | 92.2% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.74 | 70.0 | 5.93e-01 | 99.4% | 88.7% |
| 5zyuA01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.69 | 58.0 | 5.47e-01 | 88.3% | 100.0% |
| 3k93A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.67 | 57.0 | 5.14e-01 | 88.3% | 95.5% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 32.0 | 4.14e-01 | 70.8% | 84.4% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.60 | 50.0 | 4.67e-01 | 86.0% | 81.6% |
| 2gw6A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 37.0 | 4.38e-01 | 76.6% | 94.0% |
| 4rcjA01 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.58 | 32.0 | 3.44e-01 | 70.2% | 62.3% |
| 1xmxA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 39.0 | 4.14e-01 | 80.1% | 77.2% |
| 4esjA01 | 3.40.210.30 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain | 0.51 | 33.0 | 3.46e-01 | 90.6% | 71.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4010258 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.81 | 76.0 | 6.42e-01 | 98.2% | 95.1% |
| 1311130 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.74 | 70.0 | 5.93e-01 | 99.4% | 88.7% |
| 4501322 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 60.0 | 5.33e-01 | 86.5% | 100.0% |
| 3508213 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 58.0 | 5.75e-01 | 85.4% | 87.2% |
| 4282858 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 52.0 | 3.04e-01 | 78.9% | 47.7% |
| 3480310 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 61.0 | 5.49e-01 | 100.0% | 96.4% |
| 4103907 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.63 | 53.0 | 4.06e-01 | 87.1% | 83.5% |
| 4990214 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 52.0 | 5.07e-01 | 87.1% | 100.0% |
| 3307157 | 1.1.9.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › YTH | 0.63 | 34.0 | 4.37e-01 | 71.3% | 90.8% |
| None | — | 0.62 | 53.0 | 4.56e-01 | 90.1% | 81.5% | |
| None | — | 0.62 | 52.0 | 4.27e-01 | 88.3% | 73.1% | |
| 4534629 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.62 | 40.0 | 4.64e-01 | 70.8% | 92.5% |
| 5064459 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.61 | 52.0 | 4.72e-01 | 87.7% | 89.1% |
| 4239877 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.61 | 51.0 | 4.13e-01 | 88.9% | 71.9% |
| 4945329 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.59 | 41.0 | 3.77e-01 | 70.2% | 72.1% |
| 3386658 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.57 | 41.0 | 4.06e-01 | 72.5% | 75.4% |
| 4583141 | 2008.1.1.134 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › XhoI | 0.55 | 39.0 | 3.92e-01 | 70.8% | 98.8% |
| 3506091 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.51 | 36.0 | 3.50e-01 | 71.3% | 82.2% |
| 3618616 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.50 | 30.0 | 3.59e-01 | 74.9% | 85.7% |
| 3259164 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.50 | 35.0 | 3.45e-01 | 70.8% | 82.7% |
D2
medium
residues 30-141
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 31.0 | 3.88e-01 | 73.2% | 74.2% |
| 4c23B02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 39.0 | 3.15e-01 | 70.5% | 85.9% |
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.56 | 26.0 | 2.52e-01 | 70.5% | 36.9% |
| 3hn3A03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 38.0 | 2.84e-01 | 71.4% | 83.2% |
| 3mcwA00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.54 | 37.0 | 3.05e-01 | 70.5% | 100.0% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.52 | 32.0 | 3.23e-01 | 79.5% | 59.5% |
| 5t99A03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 37.0 | 2.84e-01 | 75.9% | 99.3% |
| 6dftJ00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.51 | 41.0 | 3.11e-01 | 91.1% | 59.5% |
| 5z1aA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 36.0 | 2.67e-01 | 80.4% | 27.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4613571 | 7510.1.1.5 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › PdxA | 0.56 | 36.0 | 3.30e-01 | 79.5% | 49.7% |
| 3354260 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.51 | 39.0 | 2.82e-01 | 82.1% | 87.2% |