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OY757062.1__CAK1344561.1__K66PH128C1_LOCUS45__00045

Bact-Vir

OY757062.1__CAK1344561.1__K66PH128C1_LOCUS45__00045

Identity

Accession:
OY757062 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-60
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.80 70.0 4.80e-01 100.0% 46.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.79 64.0 5.75e-01 100.0% 65.2%
1w8kA02 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.78 54.0 4.07e-01 100.0% 31.8%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 54.0 4.52e-01 100.0% 45.3%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.73 54.0 4.52e-01 100.0% 45.8%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.72 55.0 3.11e-01 83.3% 24.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.69 57.0 4.77e-01 100.0% 54.3%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.69 56.0 4.69e-01 100.0% 53.2%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.67 56.0 4.68e-01 100.0% 63.0%
6eo5B01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.67 43.0 2.77e-01 79.2% 13.1%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 49.0 4.09e-01 100.0% 44.8%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 51.0 4.72e-01 100.0% 68.9%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.64 55.0 4.64e-01 100.0% 91.7%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 54.0 3.65e-01 95.8% 50.3%
5jzxD02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.63 47.0 3.34e-01 81.2% 80.1%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 52.0 4.13e-01 100.0% 45.0%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.62 54.0 3.38e-01 100.0% 44.2%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 50.0 4.07e-01 100.0% 45.9%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.61 50.0 4.99e-01 100.0% 90.0%
1ghpA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 44.0 2.86e-01 81.2% 81.3%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.61 49.0 4.91e-01 100.0% 89.8%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 52.0 4.03e-01 100.0% 46.4%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.61 47.0 3.50e-01 85.4% 38.0%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 49.0 3.69e-01 100.0% 36.8%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 43.0 3.35e-01 81.2% 86.4%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 3.76e-01 100.0% 38.7%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 47.0 3.10e-01 83.3% 39.6%
1alo006 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.59 47.0 3.54e-01 91.7% 37.3%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.58 45.0 3.98e-01 100.0% 56.6%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.73e-01 100.0% 63.8%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 2.90e-01 93.8% 34.2%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 43.0 3.23e-01 83.3% 34.6%
3ujzA03 2.60.20.40 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.56 42.0 3.37e-01 100.0% 40.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 45.0 4.07e-01 100.0% 69.7%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.36e-01 100.0% 53.9%
2xlgA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 47.0 3.07e-01 100.0% 30.6%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 47.0 2.97e-01 97.9% 38.1%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 48.0 2.90e-01 100.0% 88.1%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.54 43.0 3.16e-01 89.6% 35.0%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 3.77e-01 100.0% 55.7%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 42.0 2.83e-01 100.0% 60.4%
2g5dA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.54 42.0 2.86e-01 89.6% 37.3%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 42.0 4.13e-01 100.0% 85.5%
6bn3A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 39.0 2.55e-01 85.4% 39.0%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.09e-01 100.0% 75.0%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.53 46.0 3.46e-01 100.0% 43.4%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 41.0 4.16e-01 100.0% 89.8%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.14e-01 100.0% 63.1%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.17e-01 100.0% 33.3%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.51 44.0 3.81e-01 100.0% 72.2%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.51 35.0 3.03e-01 100.0% 44.9%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.36e-01 100.0% 88.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.82 74.0 6.49e-01 100.0% 97.1%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.78 68.0 6.04e-01 100.0% 95.7%
3734833 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.77 67.0 5.47e-01 100.0% 94.4%
3628286 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.76 54.0 3.92e-01 75.0% 53.1%
4623707 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.73 57.0 4.48e-01 83.3% 74.7%
5080080 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.73 55.0 3.18e-01 81.2% 14.8%
5047668 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.71 49.0 3.09e-01 100.0% 14.1%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.70 57.0 4.62e-01 89.6% 80.0%
4028716 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.69 52.0 3.79e-01 83.3% 34.8%
3475200 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.68 51.0 3.68e-01 79.2% 79.2%
3575366 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.68 59.0 4.75e-01 100.0% 64.2%
77927 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.67 56.0 4.64e-01 100.0% 61.7%
5045774 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.66 57.0 4.11e-01 100.0% 33.6%
4405873 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.66 53.0 3.94e-01 85.4% 92.2%
3941069 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.66 58.0 4.36e-01 100.0% 44.1%
4881621 10.12.1.43 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-Fe_Oxy_2 0.66 46.0 3.04e-01 100.0% 16.1%
3256557 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.66 56.0 4.74e-01 100.0% 88.2%
3929391 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.65 55.0 4.32e-01 100.0% 68.2%
3270265 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.65 52.0 3.75e-01 87.5% 80.0%
4102844 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.65 58.0 4.41e-01 100.0% 60.0%
3496147 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 54.0 4.43e-01 100.0% 70.0%
3443843 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.65 58.0 3.22e-01 97.9% 14.0%
3369564 130.1.1.39 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF7086 0.65 47.0 3.36e-01 81.2% 26.4%
4072763 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.65 48.0 3.66e-01 81.2% 89.8%
5047755 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.65 56.0 4.02e-01 100.0% 33.6%
3404684 10.12.1.84 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.65 55.0 3.66e-01 97.9% 36.7%
4945301 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 50.0 3.58e-01 87.5% 77.3%
3349141 375.1.1.182 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7086 0.63 46.0 3.29e-01 81.2% 26.4%
3715519 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 44.0 2.92e-01 77.1% 17.6%
3602534 375.1.1.199 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 0.63 47.0 5.01e-01 95.8% 97.5%
3271532 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.63 52.0 3.56e-01 89.6% 48.6%
5027350 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.63 51.0 3.77e-01 100.0% 33.3%
3392249 223.2.1.36 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.63 49.0 3.47e-01 85.4% 84.5%
3406258 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.62 53.0 4.41e-01 100.0% 64.4%
3704667 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.62 52.0 3.18e-01 100.0% 17.0%
4930766 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.62 54.0 3.94e-01 100.0% 50.4%
4943472 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.61 45.0 3.66e-01 83.3% 45.7%
3794835 3662.1.1.1 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 0.61 46.0 3.66e-01 83.3% 78.0%
3622513 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 52.0 4.85e-01 97.9% 95.0%
4974057 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.61 53.0 3.26e-01 100.0% 45.7%
3249305 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.47e-01 81.2% 42.9%
3926408 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.59 48.0 3.81e-01 91.7% 77.7%
4189709 288.1.1.1 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.59 48.0 3.21e-01 100.0% 20.9%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.59 44.0 4.58e-01 100.0% 91.1%
3620613 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.94e-01 100.0% 95.6%
3915206 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.58 50.0 3.46e-01 100.0% 64.0%
3493644 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.58 50.0 3.50e-01 100.0% 67.9%
3501051 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.58 47.0 3.74e-01 100.0% 57.4%
3935404 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.58 45.0 3.74e-01 100.0% 47.8%
3302114 109.4.1.619 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.58 48.0 3.57e-01 100.0% 65.9%
2640865 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 49.0 4.72e-01 100.0% 90.9%
3251650 10.2.1.84 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Seipin 0.57 49.0 3.48e-01 100.0% 74.2%
223777 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.56 42.0 3.69e-01 100.0% 53.3%
3187671 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 48.0 4.53e-01 100.0% 83.3%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.56 47.0 4.67e-01 100.0% 94.0%
3543316 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.56 49.0 2.89e-01 100.0% 27.0%
3244077 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.56 48.0 4.51e-01 100.0% 83.3%
3954522 3108.1.1.0 a+b two layers › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 0.55 46.0 4.18e-01 100.0% 90.0%
5000843 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 48.0 3.63e-01 97.9% 63.5%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.54 45.0 4.52e-01 100.0% 96.0%
5052830 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.32e-01 100.0% 55.3%
3816922 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 44.0 2.77e-01 100.0% 22.1%
4990489 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 41.0 4.15e-01 100.0% 96.0%