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OY757065.1__CAK1257019.1__K40PH129C1_LOCUS56__00056
Bact-VirOY757065.1__CAK1257019.1__K40PH129C1_LOCUS56__00056
Identity
- Accession:
- OY757065 ↗
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Drulisvirus›
Klebsiella_phage_vB_Kpn_K40PH129C1
TaxID: 3071612
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-106
Domain cluster:
rep: NC_027397.1__YP_009153046.1__ACQ41_gp20__00020__D9-117
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03906.21 best | Phage_T7_tail | 42.3 | 1.00e-10 | 98.0% | 72.8% |
D2
high
residues 878-928
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bwlB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.69 | 50.0 | 3.81e-01 | 100.0% | 32.5% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.67 | 48.0 | 3.62e-01 | 100.0% | 29.0% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 54.0 | 4.96e-01 | 98.0% | 69.1% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.66 | 41.0 | 2.81e-01 | 94.1% | 17.1% |
| 3u2aA00 | 3.30.450.310 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.66 | 43.0 | 3.34e-01 | 98.0% | 30.4% |
| 1wqsA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 52.0 | 4.15e-01 | 96.1% | 43.7% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 52.0 | 3.03e-01 | 92.2% | 38.9% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 43.0 | 3.23e-01 | 100.0% | 25.2% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.64 | 48.0 | 3.82e-01 | 100.0% | 38.4% |
| 7sxqA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.63 | 48.0 | 3.12e-01 | 84.3% | 84.3% |
| 3ugfB02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.63 | 47.0 | 3.20e-01 | 96.1% | 23.2% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.63 | 47.0 | 4.88e-01 | 98.0% | 89.1% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.63 | 47.0 | 4.51e-01 | 98.0% | 69.8% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 48.0 | 3.68e-01 | 100.0% | 37.3% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.61 | 41.0 | 3.06e-01 | 100.0% | 26.1% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 51.0 | 4.06e-01 | 96.1% | 48.6% |
| 1bvuA01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.61 | 46.0 | 3.32e-01 | 82.4% | 95.9% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 48.0 | 3.93e-01 | 96.1% | 45.2% |
| 1hwyA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.61 | 46.0 | 3.32e-01 | 82.4% | 96.0% |
| 7a6pB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 44.0 | 3.27e-01 | 96.1% | 29.7% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 45.0 | 4.16e-01 | 98.0% | 62.5% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 42.0 | 3.84e-01 | 100.0% | 55.3% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 45.0 | 3.29e-01 | 92.2% | 88.0% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 41.0 | 3.33e-01 | 98.0% | 35.3% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.57 | 39.0 | 3.00e-01 | 100.0% | 27.1% |
| 1h4iA00 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.57 | 47.0 | 2.71e-01 | 100.0% | 29.1% |
| 1e5tA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 47.0 | 2.83e-01 | 94.1% | 19.3% |
| 4ckmB00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.56 | 43.0 | 3.30e-01 | 92.2% | 95.8% |
| 2imlA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 39.0 | 3.19e-01 | 98.0% | 34.5% |
| 3azoA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 46.0 | 2.92e-01 | 96.1% | 25.8% |
| 4hvtA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 46.0 | 2.83e-01 | 94.1% | 21.2% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 3.58e-01 | 96.1% | 55.6% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 38.0 | 3.41e-01 | 100.0% | 47.6% |
| 3f02B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 45.0 | 3.73e-01 | 98.0% | 100.0% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.54 | 39.0 | 3.33e-01 | 100.0% | 45.2% |
| 5ay6A01 | 2.60.98.20 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE | 0.54 | 40.0 | 2.85e-01 | 84.3% | 82.5% |
| 2y3aA01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 43.0 | 2.68e-01 | 88.2% | 26.8% |
| 2xe4A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 43.0 | 2.62e-01 | 94.1% | 18.2% |
| 5n6lA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.53 | 44.0 | 2.82e-01 | 98.0% | 27.5% |
| 5ncsA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 40.0 | 3.10e-01 | 92.2% | 82.7% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 40.0 | 3.03e-01 | 88.2% | 91.5% |
| 3le2A02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 42.0 | 3.19e-01 | 92.2% | 75.6% |
| 3cwcA02 | 3.90.1510.10 | Alpha Beta › Alpha-Beta Complex › Glycerate kinase, domain 2 › Glycerate kinase, domain 2 | 0.52 | 40.0 | 2.70e-01 | 88.2% | 57.0% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.03e-01 | 94.1% | 64.0% |
| 2hdwA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 42.0 | 2.77e-01 | 92.2% | 27.8% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 44.0 | 3.45e-01 | 100.0% | 80.3% |
| 4qxaB00 | 2.30.29.230 | Mainly Beta › Roll › PH-domain like › | 0.52 | 37.0 | 2.84e-01 | 84.3% | 60.5% |
| 2rovA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.01e-01 | 84.3% | 94.0% |
| 4lduA02 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.51 | 43.0 | 3.36e-01 | 100.0% | 44.3% |
| 3plsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 40.0 | 3.29e-01 | 92.2% | 70.2% |
| 4r9iA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.51 | 42.0 | 3.51e-01 | 100.0% | 98.0% |
| 1c3gA01 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.50 | 37.0 | 3.26e-01 | 92.2% | 52.6% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3648413 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.71 | 50.0 | 4.14e-01 | 100.0% | 42.2% |
| 3713334 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.70 | 50.0 | 4.84e-01 | 96.1% | 66.7% |
| 3591474 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.67 | 49.0 | 3.22e-01 | 78.4% | 30.5% |
| 4950257 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.66 | 49.0 | 3.74e-01 | 98.0% | 32.3% |
| 3331997 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.65 | 57.0 | 4.32e-01 | 96.1% | 63.5% |
| 5059491 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.62 | 46.0 | 3.09e-01 | 80.4% | 61.5% |
| 3397976 | 913.1.1.0 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) | 0.62 | 43.0 | 3.83e-01 | 94.1% | 50.7% |
| 4959715 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 43.0 | 2.60e-01 | 94.1% | 10.1% |
| 3257350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 42.0 | 4.36e-01 | 92.2% | 82.2% |
| 3974359 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.61 | 47.0 | 3.73e-01 | 100.0% | 38.3% |
| 4001391 | 11.1.1.842 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C | 0.61 | 39.0 | 2.63e-01 | 92.2% | 16.1% |
| 3717300 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.61 | 49.0 | 2.87e-01 | 90.2% | 32.5% |
| 3976849 | 2007.1.6.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › ELFV_dehydrog_N | 0.60 | 47.0 | 3.14e-01 | 84.3% | 71.3% |
| 3795168 | 2007.1.6.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › ELFV_dehydrog_N | 0.60 | 45.0 | 2.91e-01 | 80.4% | 63.5% |
| 5022489 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 40.0 | 2.33e-01 | 94.1% | 7.7% |
| 3190386 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.59 | 49.0 | 3.20e-01 | 96.1% | 22.6% |
| 3207788 | 2004.1.1.187 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 | 0.59 | 49.0 | 3.32e-01 | 94.1% | 53.3% |
| 3653096 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 44.0 | 3.76e-01 | 96.1% | 49.4% |
| 3852038 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.59 | 42.0 | 3.68e-01 | 98.0% | 50.0% |
| 3678985 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.58 | 47.0 | 3.86e-01 | 92.2% | 95.0% |
| 3406688 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.58 | 43.0 | 3.43e-01 | 100.0% | 38.2% |
| 4015954 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.58 | 47.0 | 3.14e-01 | 96.1% | 22.6% |
| 3218156 | 389.1.1.145 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29138 | 0.58 | 39.0 | 4.10e-01 | 94.1% | 80.0% |
| 4599597 | 1.1.2.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Peptidase_U4 | 0.56 | 47.0 | 3.74e-01 | 100.0% | 74.8% |
| 3570522 | 385.1.1.1 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot | 0.56 | 43.0 | 3.53e-01 | 86.3% | 91.0% |
| 4026119 | 11.1.4.16 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMC7_beta-sandw | 0.56 | 38.0 | 2.91e-01 | 90.2% | 31.3% |
| 3795553 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.56 | 43.0 | 3.62e-01 | 92.2% | 48.4% |
| 4315296 | 5054.1.1.7 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA | 0.56 | 40.0 | 3.14e-01 | 80.4% | 43.1% |
| 3194180 | 221.17.1.2 ↗ | a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 › BCD1 | 0.56 | 45.0 | 3.17e-01 | 92.2% | 65.3% |
| 3490141 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.55 | 44.0 | 3.27e-01 | 100.0% | 31.7% |
| 3649881 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.55 | 39.0 | 3.32e-01 | 76.5% | 49.4% |
| 3199036 | 63.1.1.4 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH_1 | 0.55 | 45.0 | 3.47e-01 | 100.0% | 56.3% |
| 3818311 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.55 | 43.0 | 3.14e-01 | 100.0% | 28.7% |
| 3236742 | 2484.1.1.233 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 | 0.54 | 46.0 | 2.90e-01 | 98.0% | 77.4% |
| 4470603 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.54 | 43.0 | 3.18e-01 | 100.0% | 29.7% |
| 3608562 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 38.0 | 2.88e-01 | 98.0% | 25.8% |
| 3634173 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.54 | 45.0 | 3.30e-01 | 98.0% | 65.8% |
| 4963083 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.54 | 43.0 | 2.96e-01 | 96.1% | 23.0% |
| 3913149 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.54 | 45.0 | 3.30e-01 | 100.0% | 32.7% |
| 1923961 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.54 | 44.0 | 3.01e-01 | 96.1% | 34.8% |
| 3267804 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 40.0 | 3.39e-01 | 90.2% | 54.0% |
| 4241225 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.53 | 45.0 | 2.80e-01 | 100.0% | 29.4% |
| None | — | 0.52 | 39.0 | 2.54e-01 | 88.2% | 27.7% | |
| 3527281 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.52 | 39.0 | 2.72e-01 | 100.0% | 23.2% |
| 3894729 | 4.1.1.461 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH | 0.52 | 40.0 | 3.41e-01 | 100.0% | 48.9% |
| 4967405 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 46.0 | 3.59e-01 | 98.0% | 65.7% |
| 3625971 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.52 | 43.0 | 3.21e-01 | 98.0% | 67.6% |
| 3594429 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.51 | 41.0 | 3.52e-01 | 100.0% | 59.6% |
| 3974170 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 40.0 | 3.27e-01 | 100.0% | 45.0% |
| 3650296 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.50 | 41.0 | 3.51e-01 | 100.0% | 54.7% |
| 3415138 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.50 | 37.0 | 2.48e-01 | 98.0% | 18.7% |
| 3940967 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.50 | 40.0 | 2.49e-01 | 94.1% | 22.7% |
| 3624923 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.50 | 42.0 | 3.30e-01 | 92.2% | 44.8% |
D3
medium
residues 139-238
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.54 | 43.0 | 2.79e-01 | 88.0% | 80.4% |
D4
medium
residues 257-398_421-563_605-718_735-865
Domain cluster:
rep: MH707428.1__AYJ76445.1__BSP11_017__00017__D104-550
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gq8A01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.75 | 61.0 | 6.59e-01 | 94.7% | 94.2% |
| 7b7aA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 49.0 | 5.81e-01 | 87.7% | 95.8% |
| 1k5cA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 45.0 | 5.73e-01 | 71.1% | 99.4% |
| 1rmgA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 48.0 | 5.38e-01 | 88.7% | 83.4% |
| 4c2lA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 49.0 | 5.79e-01 | 84.3% | 97.3% |
| 1hg8A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 46.0 | 5.71e-01 | 82.8% | 98.6% |
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.69 | 57.0 | 5.90e-01 | 99.6% | 88.1% |
| 1ogoX02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 46.0 | 5.52e-01 | 82.3% | 97.3% |
| 3jurA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.67 | 52.0 | 5.67e-01 | 83.4% | 93.0% |
| 4nk6A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.65 | 48.0 | 5.44e-01 | 85.5% | 94.1% |
| 5z9tA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.64 | 52.0 | 5.40e-01 | 89.2% | 88.4% |
| 6kqsA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.64 | 48.0 | 5.39e-01 | 87.4% | 95.5% |
| 1dabA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.59 | 54.0 | 5.46e-01 | 99.8% | 94.4% |
| 1qjvA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.59 | 36.0 | 4.49e-01 | 77.9% | 93.3% |
| 4pmhA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.58 | 36.0 | 4.36e-01 | 70.4% | 89.3% |
| 3grhA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.55 | 36.0 | 4.15e-01 | 86.8% | 85.9% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4977972 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.81 | 40.0 | 5.90e-01 | 77.4% | 100.0% |
| 5050988 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.80 | 40.0 | 5.79e-01 | 86.8% | 96.3% |
| 4969216 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.79 | 41.0 | 5.55e-01 | 74.7% | 89.8% |
| 3164978 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.79 | 48.0 | 6.15e-01 | 70.6% | 97.0% |
| 2546335 | 207.2.1.32 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › CatAgl_D2 | 0.76 | 55.0 | 6.34e-01 | 82.1% | 95.5% |
| 4446517 | 207.2.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix | 0.76 | 53.0 | 6.30e-01 | 94.9% | 96.9% |
| 4527582 | 207.2.1.76 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim, Beta_helix | 0.76 | 52.0 | 6.22e-01 | 82.5% | 95.6% |
| 4982115 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.75 | 30.0 | 5.08e-01 | 79.8% | 99.0% |
| 4982073 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.75 | 47.0 | 6.01e-01 | 82.8% | 98.5% |
| 4941932 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.75 | 46.0 | 5.90e-01 | 92.6% | 98.2% |
| 4942054 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.75 | 46.0 | 5.92e-01 | 71.5% | 97.9% |
| 3935084 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.74 | 43.0 | 5.67e-01 | 92.6% | 100.0% |
| 3254326 | 207.2.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chlam_PMP | 0.73 | 46.0 | 5.80e-01 | 86.4% | 99.7% |
| 5003179 | 207.2.1.121 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Disaggr_assoc | 0.73 | 53.0 | 6.01e-01 | 89.2% | 95.1% |
| 3586654 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.72 | 55.0 | 4.87e-01 | 99.8% | 55.8% |
| 5031536 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.72 | 52.0 | 6.03e-01 | 94.2% | 97.7% |
| 2581319 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.71 | 47.0 | 5.68e-01 | 94.5% | 96.9% |
| 4981826 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.71 | 43.0 | 4.50e-01 | 85.8% | 64.2% |
| 3586852 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.71 | 52.0 | 5.77e-01 | 73.6% | 97.2% |
| 4946035 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.70 | 57.0 | 5.98e-01 | 94.3% | 89.1% |
| 2783205 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.70 | 38.0 | 5.27e-01 | 75.1% | 99.3% |
| 4973391 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.70 | 43.0 | 5.38e-01 | 86.8% | 94.1% |
| 4542541 | 207.9.1.8 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3, Pentapeptide_4 | 0.70 | 28.0 | 4.67e-01 | 80.2% | 100.0% |
| 3450871 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.70 | 37.0 | 5.17e-01 | 75.1% | 98.5% |
| 3435704 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.70 | 49.0 | 5.77e-01 | 84.2% | 97.7% |
| 4955482 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.69 | 48.0 | 5.68e-01 | 95.5% | 97.4% |
| 3828319 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.69 | 55.0 | 5.99e-01 | 96.4% | 95.2% |
| 4855553 | 207.2.1.94 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim | 0.68 | 43.0 | 5.42e-01 | 85.1% | 99.4% |
| 4009908 | 207.2.1.66 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › WcaM | 0.67 | 54.0 | 5.88e-01 | 91.9% | 96.0% |
| 4932813 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.67 | 51.0 | 5.79e-01 | 83.2% | 97.8% |
| 3805269 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.67 | 36.0 | 4.62e-01 | 80.0% | 85.6% |
| 5034346 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.66 | 42.0 | 5.19e-01 | 84.9% | 95.9% |
| 3312237 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.66 | 33.0 | 4.55e-01 | 80.0% | 90.5% |
| 3269770 | 207.2.1.73 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › PF29740 | 0.66 | 57.0 | 4.97e-01 | 95.5% | 62.7% |
| 3713775 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.66 | 46.0 | 5.52e-01 | 82.8% | 99.7% |
| 2491360 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.65 | 50.0 | 5.59e-01 | 92.3% | 97.4% |
| 3428231 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.65 | 36.0 | 4.50e-01 | 74.3% | 84.0% |
| 4972655 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.64 | 48.0 | 5.52e-01 | 93.0% | 98.8% |
| 4981823 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.64 | 45.0 | 4.64e-01 | 88.3% | 73.7% |
| 3287619 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.63 | 47.0 | 5.24e-01 | 94.2% | 92.9% |
| 4147072 | 207.2.1.10 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin | 0.63 | 56.0 | 5.78e-01 | 99.2% | 97.0% |
| 4980388 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.62 | 51.0 | 5.37e-01 | 96.0% | 91.3% |
| 397790 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.62 | 46.0 | 4.98e-01 | 74.0% | 89.0% |
| 3607948 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.62 | 40.0 | 4.94e-01 | 94.7% | 98.5% |
| 3250813 | 207.2.1.73 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › PF29740 | 0.61 | 54.0 | 4.89e-01 | 95.1% | 69.6% |
| 3259866 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.60 | 51.0 | 5.20e-01 | 95.5% | 88.6% |
| 3195366 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.59 | 42.0 | 4.85e-01 | 75.1% | 95.6% |
| 3269647 | 207.1.1.129 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_ComC | 0.59 | 33.0 | 4.38e-01 | 90.4% | 97.2% |
| 5033716 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.55 | 41.0 | 3.77e-01 | 74.9% | 97.0% |
| 3355383 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.54 | 31.0 | 4.12e-01 | 85.8% | 100.0% |
D5
medium
residues 564-604_719-734
Domain cluster:
representative