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OY757066.1__CAK1257086.1__K70PH128C1_LOCUS58__00058

Bact-Vir

OY757066.1__CAK1257086.1__K70PH128C1_LOCUS58__00058

Identity

Accession:
OY757066 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_vB_Ko_K70PH128C1

TaxID: 3071662

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-74
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.67 43.0 3.76e-01 100.0% 44.0%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.64 35.0 4.08e-01 92.5% 78.3%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.63 41.0 4.20e-01 88.1% 68.2%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.62 41.0 3.68e-01 100.0% 47.9%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.60 43.0 4.19e-01 88.1% 68.0%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 32.0 2.74e-01 92.5% 29.7%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.58 48.0 3.81e-01 95.5% 80.3%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.57 29.0 2.99e-01 95.5% 45.2%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 32.0 2.61e-01 92.5% 25.4%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 33.0 2.82e-01 94.0% 32.1%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 38.0 3.07e-01 73.1% 93.6%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 3.95e-01 100.0% 76.6%
3mfxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 28.0 2.36e-01 73.1% 26.3%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 44.0 4.26e-01 91.0% 80.5%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.54 35.0 2.86e-01 100.0% 33.1%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 43.0 4.11e-01 88.1% 83.3%
1hwyA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.52 44.0 3.41e-01 92.5% 72.5%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.26e-01 100.0% 69.6%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 42.0 2.88e-01 95.5% 59.6%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 4.00e-01 100.0% 83.8%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 2.77e-01 86.6% 81.5%
1bvuA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.51 42.0 3.33e-01 94.0% 73.3%
7f79A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.51 41.0 3.20e-01 94.0% 65.7%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 2.98e-01 91.0% 88.6%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.50 39.0 3.18e-01 100.0% 44.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3522563 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.66 39.0 4.67e-01 77.6% 97.5%
3591474 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.64 44.0 3.04e-01 92.5% 21.8%
5061316 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.63 34.0 2.74e-01 92.5% 26.9%
3589333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 3.98e-01 100.0% 55.8%
3633076 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.59 33.0 2.86e-01 94.0% 32.4%
5008201 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 32.0 2.92e-01 94.0% 35.8%
3236876 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.58 49.0 3.31e-01 97.0% 85.9%
4438762 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.57 32.0 3.00e-01 76.1% 41.2%
3182025 4.1.1.475 ↗ beta barrels › SH3 › SH3 › SH3 › PF26640 0.56 40.0 3.29e-01 100.0% 38.5%
3636066 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.56 43.0 3.43e-01 91.0% 89.4%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.73e-01 100.0% 66.7%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 40.0 3.91e-01 100.0% 72.0%
4378403 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.53 43.0 2.46e-01 91.0% 8.1%
4283343 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 37.0 3.60e-01 100.0% 63.7%
5002475 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.53 40.0 2.63e-01 86.6% 17.7%
3514522 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.53 43.0 4.16e-01 100.0% 78.7%
4029824 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.52 43.0 2.89e-01 92.5% 74.6%
2507516 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.52 42.0 2.51e-01 91.0% 11.6%
3991044 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.52 30.0 2.57e-01 94.0% 32.2%
4967405 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.28e-01 77.6% 75.2%
4021130 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.52 39.0 2.83e-01 82.1% 39.0%
3194180 221.17.1.2 ↗ a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 › BCD1 0.52 38.0 2.95e-01 82.1% 38.2%
5012554 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 3.02e-01 94.0% 39.5%
D2 medium residues 86-153
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rfsS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.70 53.0 3.75e-01 100.0% 28.9%
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 4.18e-01 79.4% 94.7%
2v6eA04 1.10.10.2040 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 34.0 3.04e-01 85.3% 41.9%
3ue3A03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 41.0 3.02e-01 76.5% 68.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214557 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.82 56.0 4.96e-01 70.6% 61.1%
2701215 1166.1.1.1 ↗ alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.78 44.0 3.12e-01 88.2% 20.5%
4535565 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.67 52.0 4.57e-01 83.8% 58.0%
3523924 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.65 49.0 4.41e-01 83.8% 58.0%
3525287 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.64 55.0 3.79e-01 98.5% 70.4%
3594068 3959.1.1.0 ↗ alpha duplicates or obligate multimers › Protein Hikeshi dimerization domain › Protein Hikeshi dimerization domain › Protein Hikeshi dimerization domain 0.63 48.0 4.52e-01 79.4% 70.0%
3797062 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 58.0 4.41e-01 100.0% 86.2%
3404898 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.60 52.0 4.52e-01 97.1% 63.1%
3967125 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 54.0 4.11e-01 100.0% 90.3%
5050026 109.2.1.35 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Hepar_II_III_N 0.58 39.0 2.48e-01 70.6% 80.0%
3207999 3660.1.1.4 ↗ alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › DUF7785 0.58 47.0 4.18e-01 89.7% 62.1%
4001843 304.4.1.51 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › RVT_1 0.53 41.0 3.42e-01 86.8% 53.8%
4012926 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.52 37.0 2.55e-01 76.5% 71.8%
3590841 7516.1.1.11 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 0.52 40.0 2.74e-01 83.8% 94.0%