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OY757094.1__CAK1257590.1__K29PH164C1_LOCUS33__00033
Bact-VirOY757094.1__CAK1257590.1__K29PH164C1_LOCUS33__00033
Identity
- Accession:
- OY757094 ↗
- Kingdom:
- phage
Quality
93.3
mean pLDDT
Taxonomy
TaxID: 3071669
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-64
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08774.18 best | VRR_NUC | 24.3 | 3.70e-05 | 84.1% | 35.6% |
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qblE00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.89 | 79.0 | 6.11e-01 | 100.0% | 47.6% |
| 4qboA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.78 | 62.0 | 5.55e-01 | 100.0% | 60.9% |
| 4qbnA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.76 | 62.0 | 5.48e-01 | 100.0% | 62.4% |
| 4basA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 53.0 | 3.97e-01 | 100.0% | 92.4% |
| 3qkwB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 50.0 | 3.67e-01 | 92.1% | 37.4% |
| 2px0A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 53.0 | 3.82e-01 | 100.0% | 40.0% |
| 6lyxA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 44.0 | 3.65e-01 | 79.4% | 43.6% |
| 3r3pB00 | 3.40.960.10 | Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease | 0.60 | 52.0 | 4.57e-01 | 100.0% | 64.3% |
| 3r5xA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 46.0 | 4.28e-01 | 87.3% | 65.9% |
| 3qq5A02 | 3.40.50.11420 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 50.0 | 4.22e-01 | 98.4% | 54.1% |
| 3kc2A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.59 | 46.0 | 3.46e-01 | 85.7% | 52.4% |
| 4bxoA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 50.0 | 3.99e-01 | 98.4% | 64.4% |
| 4rk6A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 52.0 | 4.14e-01 | 100.0% | 88.9% |
| 1iqpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 43.0 | 3.22e-01 | 81.0% | 40.5% |
| 1isiA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 44.0 | 3.65e-01 | 87.3% | 82.0% |
| 1j24A00 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 49.0 | 3.93e-01 | 98.4% | 70.7% |
| 1gh2A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 46.0 | 3.91e-01 | 88.9% | 63.6% |
| 1r0sA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 44.0 | 3.61e-01 | 87.3% | 81.8% |
| 4cw9B00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 46.0 | 3.94e-01 | 90.5% | 64.4% |
| 5ykwA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 46.0 | 3.91e-01 | 90.5% | 63.2% |
| 3nbkD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 48.0 | 3.66e-01 | 100.0% | 46.6% |
| 1pyoC00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 44.0 | 3.45e-01 | 92.1% | 41.0% |
| 3d6iA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 45.0 | 3.77e-01 | 88.9% | 60.0% |
| 2vk2A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 48.0 | 3.89e-01 | 100.0% | 87.0% |
| 2l6cA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 40.0 | 3.51e-01 | 82.5% | 47.1% |
| 4ze8A03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.55 | 45.0 | 3.21e-01 | 93.7% | 60.0% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.55 | 46.0 | 3.66e-01 | 95.2% | 95.7% |
| 3weeB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 45.0 | 3.43e-01 | 96.8% | 82.5% |
| 2hoqA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 49.0 | 3.63e-01 | 100.0% | 93.0% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 45.0 | 3.79e-01 | 93.7% | 65.2% |
| 6i1cA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 44.0 | 3.71e-01 | 88.9% | 62.0% |
| 1iv0A00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.55 | 42.0 | 3.68e-01 | 84.1% | 92.9% |
| 1r26A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 44.0 | 3.68e-01 | 90.5% | 58.4% |
| 2agkA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 43.0 | 2.99e-01 | 90.5% | 62.2% |
| 5aykA05 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 43.0 | 3.69e-01 | 88.9% | 62.7% |
| 2bh1X00 | 3.30.300.160 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain | 0.54 | 36.0 | 3.61e-01 | 87.3% | 66.2% |
| 7drdG01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.54 | 45.0 | 3.11e-01 | 100.0% | 87.5% |
| 6g62A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 42.0 | 3.59e-01 | 90.5% | 50.4% |
| 3zx4A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 47.0 | 3.48e-01 | 100.0% | 97.5% |
| 2f51A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 41.0 | 3.53e-01 | 88.9% | 64.0% |
| 2zyoA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 42.0 | 3.08e-01 | 93.7% | 68.2% |
| 1hh2P03 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 38.0 | 3.58e-01 | 82.5% | 65.8% |
| 5aykA03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 43.0 | 3.62e-01 | 96.8% | 58.4% |
| 2vf7B03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.67e-01 | 90.5% | 68.6% |
| 2dbcA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 40.0 | 3.22e-01 | 90.5% | 48.1% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1349404 | 2008.1.1.31 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC | 0.88 | 79.0 | 6.16e-01 | 100.0% | 49.2% |
| 4952299 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 52.0 | 3.75e-01 | 82.5% | 25.6% |
| 5041724 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.67 | 51.0 | 3.75e-01 | 82.5% | 49.1% |
| 3517411 | 2008.1.1.30 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Tn7_TnsA-like_N | 0.66 | 56.0 | 3.98e-01 | 98.4% | 44.5% |
| 3596453 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.64 | 50.0 | 4.38e-01 | 87.3% | 55.0% |
| 4369536 | 2003.1.10.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N | 0.64 | 47.0 | 4.26e-01 | 84.1% | 56.7% |
| 3402688 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 54.0 | 3.81e-01 | 100.0% | 53.3% |
| 4971847 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.63 | 49.0 | 4.51e-01 | 85.7% | 70.6% |
| 3721036 | 7604.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_N | 0.63 | 49.0 | 4.01e-01 | 90.5% | 96.3% |
| 3980902 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.63 | 49.0 | 3.34e-01 | 82.5% | 42.3% |
| 4964861 | 2006.1.6.38 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF444 | 0.63 | 55.0 | 3.79e-01 | 100.0% | 74.2% |
| 3932280 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.62 | 48.0 | 3.01e-01 | 85.7% | 28.8% |
| 4811012 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.62 | 53.0 | 4.97e-01 | 96.8% | 100.0% |
| 4229090 | 2003.1.10.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N | 0.61 | 47.0 | 3.91e-01 | 87.3% | 48.3% |
| 5079187 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.60 | 47.0 | 4.01e-01 | 85.7% | 61.0% |
| 4991210 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.60 | 49.0 | 3.45e-01 | 96.8% | 93.7% |
| 1148114 | 2004.1.1.217 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HydF_dimer | 0.60 | 50.0 | 4.29e-01 | 96.8% | 57.3% |
| 4164230 | 2007.1.6.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH | 0.59 | 49.0 | 4.15e-01 | 92.1% | 57.1% |
| 4120451 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 46.0 | 3.72e-01 | 93.7% | 46.7% |
| 1720234 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.57 | 45.0 | 3.92e-01 | 88.9% | 60.4% |
| 5004101 | 2005.1.1.16 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Diphthami_syn_2 | 0.57 | 49.0 | 3.37e-01 | 100.0% | 36.2% |
| 3649285 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.57 | 48.0 | 3.77e-01 | 100.0% | 82.7% |
| 3829861 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.55 | 44.0 | 3.68e-01 | 88.9% | 62.8% |
| 1683959 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.55 | 45.0 | 3.20e-01 | 93.7% | 60.0% |
| 4109128 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.55 | 47.0 | 3.32e-01 | 100.0% | 35.5% |
| 3589874 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.55 | 45.0 | 3.64e-01 | 100.0% | 96.5% |
| 5048614 | 2007.1.14.35 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › DUF2229 | 0.54 | 45.0 | 3.71e-01 | 100.0% | 85.4% |
| 3513926 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.54 | 44.0 | 3.42e-01 | 100.0% | 96.5% |
| 3230318 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 42.0 | 3.53e-01 | 90.5% | 64.2% |
| 5056982 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 37.0 | 3.20e-01 | 74.6% | 44.5% |
| 4954681 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 40.0 | 3.85e-01 | 88.9% | 92.5% |
| 4021724 | 2007.15.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyri_tr2 | 0.53 | 45.0 | 3.41e-01 | 100.0% | 79.4% |
| 3230620 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 42.0 | 3.42e-01 | 90.5% | 54.4% |
| 3838964 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.53 | 44.0 | 3.49e-01 | 98.4% | 57.1% |
| 3400847 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.51 | 46.0 | 3.57e-01 | 100.0% | 68.8% |
| 4001685 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.51 | 39.0 | 2.79e-01 | 85.7% | 38.6% |
| 3403697 | 2007.1.2.31 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LBD_receptor | 0.51 | 42.0 | 3.22e-01 | 100.0% | 35.4% |
| 5055194 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.51 | 37.0 | 3.68e-01 | 82.5% | 76.9% |
| 3608510 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.51 | 39.0 | 3.57e-01 | 88.9% | 65.6% |
| 160935 | 2485.1.1.11 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Phosducin | 0.51 | 40.0 | 3.22e-01 | 90.5% | 48.1% |
| 1520723 | 7523.1.1.4 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 | 0.50 | 39.0 | 3.45e-01 | 88.9% | 71.7% |