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OY976565.1__CAK6589043.1__K8PH128_LOCUS3__00003

Bact-Vir

OY976565.1__CAK6589043.1__K8PH128_LOCUS3__00003

Identity

Accession:
OY976565 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Przondovirus› Klebsiella_phage_vB_Kpl_K8PH128

TaxID: 3071619

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.69 50.0 4.45e-01 76.5% 61.3%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 35.0 3.26e-01 94.1% 36.9%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.63 44.0 3.78e-01 74.5% 67.4%
2vx2G02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.61 41.0 4.06e-01 82.4% 65.5%
3d0kB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 46.0 2.89e-01 88.2% 62.1%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 39.0 3.09e-01 78.4% 31.0%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.57 39.0 3.78e-01 72.5% 62.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3240217 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.75 42.0 3.34e-01 98.0% 29.5%
4964238 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 42.0 3.64e-01 100.0% 40.0%
4061974 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.68 52.0 4.31e-01 84.3% 67.8%
3214018 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.66 41.0 3.30e-01 100.0% 34.7%
5027571 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.65 53.0 2.98e-01 88.2% 19.3%
3493350 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.62 43.0 3.52e-01 74.5% 39.0%
5039745 2003.1.1.36 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.62 42.0 2.83e-01 72.5% 17.8%
4587906 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.61 46.0 3.70e-01 82.4% 65.0%
3211510 2003.1.5.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NNMT_PNMT_TEMT 0.60 44.0 2.81e-01 76.5% 43.6%
3506989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 39.0 4.01e-01 70.6% 70.0%
3277705 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.60 44.0 3.29e-01 80.4% 68.1%
5032862 601.14.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.58 47.0 3.38e-01 86.3% 66.4%
4538427 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.58 39.0 3.72e-01 70.6% 78.5%
3398024 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 44.0 3.56e-01 82.4% 94.7%
3829752 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.57 45.0 2.83e-01 88.2% 90.7%
5052010 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.46e-01 72.5% 60.0%
3784054 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.55 42.0 3.61e-01 86.3% 57.8%
5048617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.37e-01 74.5% 55.0%
3250088 101.46.1.1 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.52 37.0 3.10e-01 78.4% 78.9%
3595336 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.51 43.0 3.71e-01 100.0% 92.1%
3975557 3782.1.1.0 ↗ a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related 0.51 37.0 3.48e-01 94.1% 63.1%
3738669 101.46.1.0 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain 0.50 36.0 2.92e-01 80.4% 80.0%
4116764 101.1.2.840 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29821 0.50 34.0 2.84e-01 76.5% 57.4%
D2 medium residues 52-243
PDB
Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03237.22 best Terminase_6N 26.8 5.40e-06 75.5% 55.4%
D3 medium residues 244-301
PDB
Domain cluster: rep: OP272490.1__UZT49916.1__X__00005__D3-58
D4 medium residues 315-413
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22530.3 best Terminase-T7_RNaseH-like 53.8 3.00e-14 50.5% 47.2%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.67 43.0 4.08e-01 76.8% 57.0%
3d2fA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 39.0 4.05e-01 96.0% 63.4%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 36.0 4.09e-01 100.0% 81.4%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 41.0 4.59e-01 100.0% 92.1%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.54 41.0 3.60e-01 100.0% 52.3%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 38.0 2.55e-01 74.7% 42.6%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.53 40.0 3.51e-01 100.0% 52.6%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 33.0 3.60e-01 100.0% 78.5%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.17e-01 70.7% 65.2%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 29.0 3.28e-01 99.0% 75.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2877581 2484.1.1.95 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase-T7_RNaseH-like 0.93 89.0 6.29e-01 100.0% 38.5%
5041440 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.78 58.0 4.42e-01 76.8% 37.1%
4974990 2484.1.1.77 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.77 54.0 4.41e-01 76.8% 41.1%
3677519 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.72 44.0 3.33e-01 98.0% 26.5%
3592742 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 44.0 4.62e-01 99.0% 68.9%
3679236 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.70 46.0 2.95e-01 100.0% 15.5%
3677504 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.70 45.0 4.14e-01 98.0% 51.2%
3460843 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.69 44.0 2.93e-01 97.0% 17.4%
3444325 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.69 44.0 3.56e-01 99.0% 34.6%
3675008 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.69 44.0 3.65e-01 98.0% 37.6%
4929631 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 50.0 4.06e-01 76.8% 42.2%
3363185 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.68 41.0 2.85e-01 99.0% 18.5%
5031052 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 49.0 3.83e-01 76.8% 44.9%
4011588 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.66 39.0 4.36e-01 100.0% 76.0%
3669367 2484.1.1.165 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 40.0 2.80e-01 99.0% 18.5%
4961941 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 54.0 3.60e-01 91.9% 46.4%
4954298 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.62 43.0 4.37e-01 96.0% 73.7%
4932759 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 34.0 3.92e-01 84.8% 80.0%
3259407 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 34.0 3.64e-01 100.0% 71.8%
3683663 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.54 39.0 2.86e-01 76.8% 27.6%
3669022 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 30.0 3.12e-01 99.0% 55.8%
4596146 243.1.1.104 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Imm-NTF2 0.53 37.0 3.40e-01 72.7% 86.9%
4152544 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 42.0 3.75e-01 87.9% 90.3%
3864913 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.52 39.0 3.39e-01 94.9% 51.6%
1954221 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.51 36.0 3.99e-01 100.0% 96.0%