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OY978775.1__CAK6595670.1__K25PH129C1_LOCUS9__00009

Bact-Vir

OY978775.1__CAK6595670.1__K25PH129C1_LOCUS9__00009

Identity

Accession:
OY978775 ↗
Kingdom:
phage

Quality

96.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Drulisvirus› Klebsiella_phage_vB_Kpn_K25PH129C1

TaxID: 3071630

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-101
PDB
Domain cluster: rep: MN270889.1__QFP93690.1__X__00021__D1-60
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.65 42.0 3.65e-01 93.2% 43.5%
2xssA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 40.0 3.05e-01 72.6% 30.1%
5c4iE01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.60 53.0 3.84e-01 100.0% 41.0%
6k8hA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 48.0 3.63e-01 97.3% 43.3%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 48.0 3.22e-01 100.0% 86.9%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 33.0 3.32e-01 76.7% 55.1%
3ijmA00 3.90.1570.20 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.55 46.0 3.80e-01 98.6% 80.1%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.54 42.0 4.24e-01 91.8% 87.3%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 38.0 2.80e-01 74.0% 43.7%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 44.0 4.17e-01 98.6% 74.7%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.54 48.0 3.49e-01 100.0% 46.8%
6u26A01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.54 42.0 3.93e-01 95.9% 69.3%
1fiuA00 3.40.50.10010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Type-2 restriction enzyme NgoMIV 0.54 46.0 3.16e-01 100.0% 53.5%
1r89A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 41.0 3.49e-01 84.9% 92.2%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 33.0 3.21e-01 83.6% 52.9%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.53 36.0 2.79e-01 72.6% 74.6%
4y2fA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 45.0 3.61e-01 94.5% 53.1%
1k1gA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 35.0 3.05e-01 71.2% 51.6%
2rghA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 44.0 3.47e-01 97.3% 59.5%
4wqkA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.52 41.0 3.19e-01 90.4% 74.3%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 43.0 3.51e-01 97.3% 50.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3440476 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.66 58.0 4.90e-01 95.9% 73.1%
4370946 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.66 55.0 4.15e-01 90.4% 45.9%
3307439 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.65 57.0 4.71e-01 93.2% 73.8%
5029481 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.64 48.0 4.14e-01 82.2% 50.4%
4021972 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.64 30.0 2.26e-01 79.5% 18.8%
3476713 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.55 44.0 2.85e-01 100.0% 18.8%
1179385 316.1.1.7 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Pox_polyA_pol 0.55 47.0 3.50e-01 91.8% 41.6%
4943984 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 45.0 3.45e-01 100.0% 88.1%
4647466 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.53 47.0 3.02e-01 100.0% 22.2%
151131 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.52 40.0 3.21e-01 84.9% 88.0%
3476904 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.52 43.0 2.79e-01 100.0% 20.0%
3786336 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 44.0 3.50e-01 98.6% 84.8%
4089087 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.52 45.0 3.48e-01 100.0% 92.9%
3215880 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.51 41.0 2.67e-01 95.9% 19.4%
4002994 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.51 43.0 3.27e-01 100.0% 67.7%
1684035 2004.1.1.170 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_ATPase 0.50 39.0 2.72e-01 89.0% 82.9%
4022291 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.50 43.0 3.38e-01 100.0% 91.2%