←Back to structures

OY978796.1__X__K45PH128C2_LOCUS202__00202

Bact-Vir

OY978796.1__X__K45PH128C2_LOCUS202__00202

Identity

Accession:
OY978796 ↗
Kingdom:
phage

Quality

69.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mydovirus› Klebsiella_phage_vB_Kpn_K45PH128C2

TaxID: 3071666

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-105
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 44.0 4.04e-01 76.2% 73.4%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.60 52.0 3.63e-01 100.0% 66.7%
3ltoA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.59 37.0 3.19e-01 71.4% 38.8%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 40.0 3.27e-01 71.4% 88.4%
4n1yB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 41.0 3.04e-01 75.0% 99.1%
4ry9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 34.0 2.78e-01 92.9% 30.9%
1m7wA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 41.0 3.01e-01 76.2% 99.6%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 28.0 3.17e-01 82.1% 62.5%
6k6iA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 47.0 3.55e-01 98.8% 86.3%
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.52 42.0 3.26e-01 86.9% 90.2%
3hwcA01 1.10.3140.10 Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 0.50 37.0 3.18e-01 81.0% 95.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3233001 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.64 44.0 3.03e-01 70.2% 78.9%
3232151 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.64 46.0 3.24e-01 73.8% 78.0%
3219719 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.63 43.0 3.08e-01 70.2% 76.8%
4965602 605.1.1.361 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF7520 0.62 46.0 4.87e-01 78.6% 94.7%
4537278 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.54e-01 72.6% 68.5%
3186258 3911.1.1.1 ↗ extended segments › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Sas10_Utp3 0.60 42.0 3.93e-01 77.4% 59.0%
4979818 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 42.0 2.66e-01 73.8% 73.5%
3799282 3748.1.1.0 ↗ extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain 0.57 43.0 3.39e-01 78.6% 73.5%
3628751 331.18.1.0 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.57 40.0 3.07e-01 72.6% 89.2%
3230397 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.57 39.0 2.68e-01 71.4% 81.0%
3673378 188.1.1.4 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › PF28741 0.56 45.0 3.41e-01 86.9% 92.0%
2558 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.56 28.0 3.19e-01 82.1% 63.5%
5025641 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.54 40.0 2.74e-01 76.2% 80.0%
3654202 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.54 44.0 3.41e-01 88.1% 63.8%
3233746 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.54 43.0 3.27e-01 89.3% 84.5%
3544534 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 40.0 4.15e-01 82.1% 93.8%
3269346 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.53 42.0 3.07e-01 90.5% 31.5%
3862747 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 42.0 4.21e-01 88.1% 94.1%
4480624 601.50.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar cap protein FliD helical bundle domain › Flagellar cap protein FliD helical bundle domain 0.51 38.0 3.32e-01 82.1% 60.7%
3597508 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.50 41.0 4.22e-01 92.9% 100.0%