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OY978805.1__CAK6597036.1__K46PH129_LOCUS45__00045

Bact-Vir

OY978805.1__CAK6597036.1__K46PH129_LOCUS45__00045

Identity

Accession:
OY978805 ↗
Kingdom:
phage

Quality

71.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Webervirus› Klebsiella_phage_vB_Kpn_K46PH129

TaxID: 3071651

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-77
PDB
Domain cluster: rep: NC_047985.1__YP_009802580.1__HOT39_gp78__00078__D2-63
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 50.0 4.03e-01 76.1% 91.1%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 50.0 3.91e-01 77.5% 79.5%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.95e-01 100.0% 98.0%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 51.0 3.22e-01 83.1% 47.1%
3h6rA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 55.0 4.40e-01 100.0% 96.1%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.62 53.0 4.70e-01 100.0% 70.1%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.14e-01 100.0% 67.5%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 46.0 3.94e-01 84.5% 94.2%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 4.16e-01 100.0% 69.7%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.38e-01 100.0% 89.5%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 4.04e-01 100.0% 71.8%
1nunA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 50.0 4.14e-01 100.0% 92.1%
7fjlA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.59 50.0 3.51e-01 97.2% 72.4%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.58 44.0 4.04e-01 84.5% 95.9%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.08e-01 100.0% 75.5%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.03e-01 100.0% 55.0%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 3.86e-01 100.0% 68.6%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 4.09e-01 100.0% 53.9%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.57 42.0 3.80e-01 100.0% 57.9%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.86e-01 83.1% 27.7%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 49.0 3.97e-01 100.0% 55.7%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 42.0 2.95e-01 81.7% 84.8%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 43.0 2.90e-01 88.7% 47.1%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.70e-01 100.0% 63.6%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.00e-01 100.0% 76.2%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.56 44.0 3.19e-01 100.0% 29.6%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.71e-01 100.0% 69.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 39.0 3.99e-01 100.0% 80.6%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 46.0 3.73e-01 95.8% 73.0%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 2.87e-01 80.3% 89.1%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 4.17e-01 81.7% 90.5%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.57e-01 83.1% 20.1%
2x6hA02 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.54 44.0 3.43e-01 90.1% 72.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.24e-01 90.1% 85.3%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.87e-01 91.5% 52.3%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 40.0 3.36e-01 83.1% 79.8%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.71e-01 94.4% 94.3%
3kn6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 39.0 4.06e-01 84.5% 89.2%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.85e-01 100.0% 85.6%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 37.0 3.95e-01 81.7% 91.5%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 4.06e-01 94.4% 88.6%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 42.0 3.73e-01 95.8% 76.4%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.86e-01 98.6% 94.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 33.0 3.71e-01 95.8% 100.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587744 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.65 57.0 4.65e-01 100.0% 97.9%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.56e-01 100.0% 80.0%
3780792 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 54.0 4.63e-01 100.0% 88.7%
3211026 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 38.0 3.52e-01 71.8% 46.3%
3844176 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 52.0 4.16e-01 100.0% 68.0%
4253165 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 48.0 3.89e-01 90.1% 44.3%
3581896 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.60 39.0 4.10e-01 100.0% 75.4%
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.59 41.0 3.29e-01 100.0% 34.2%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.59 42.0 3.60e-01 100.0% 46.1%
3854952 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 48.0 3.96e-01 100.0% 70.0%
3480321 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 40.0 3.91e-01 71.8% 81.8%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.58 38.0 4.15e-01 100.0% 90.7%
3992786 11.1.1.1176 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 0.57 42.0 2.81e-01 84.5% 18.4%
3223544 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.57 44.0 3.78e-01 83.1% 69.6%
3702171 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.68e-01 100.0% 61.9%
3510681 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.83e-01 100.0% 92.0%
3747656 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 46.0 3.80e-01 100.0% 72.7%
3964595 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.56 47.0 4.49e-01 100.0% 78.8%
4011804 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.55 47.0 2.97e-01 100.0% 31.0%
4875038 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.55 47.0 3.82e-01 100.0% 61.3%
3872568 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.55 46.0 3.63e-01 100.0% 61.8%
3403399 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 46.0 3.99e-01 100.0% 78.3%
4651813 7515.1.1.5 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.52 40.0 2.45e-01 83.1% 79.4%
4025256 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 39.0 3.86e-01 85.9% 91.3%
3518510 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 44.0 3.94e-01 97.2% 72.4%
3369818 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.52 38.0 4.00e-01 85.9% 87.7%
5031001 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 44.0 3.44e-01 95.8% 92.3%
3433041 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 39.0 2.70e-01 87.3% 48.8%
3506773 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.51 43.0 3.69e-01 97.2% 65.0%
4673289 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 44.0 3.33e-01 97.2% 96.6%
4491369 2003.1.3.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.51 43.0 2.80e-01 93.0% 76.1%
4970357 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.51 44.0 2.60e-01 98.6% 22.6%
4980908 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 44.0 3.45e-01 98.6% 92.9%
3660366 2003.1.2.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.51 42.0 2.81e-01 94.4% 70.7%
3367161 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 42.0 3.46e-01 100.0% 71.7%