←Back to structures

OY978837.1__CAK6596542.1__K44PH129C1_LOCUS15__00015

Bact-Vir

OY978837.1__CAK6596542.1__K44PH129C1_LOCUS15__00015

Identity

Accession:
OY978837 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Ulipvirus› Klebsiella_phage_vB_Kpl_K44PH129C1

TaxID: 3071657

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-56
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.73 54.0 4.55e-01 80.8% 56.8%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.67 53.0 4.87e-01 90.4% 77.1%
1zl8B00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.65 51.0 5.06e-01 90.4% 88.9%
5ow2A00 1.10.10.930 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 52.0 4.73e-01 96.2% 74.0%
6vg5A00 1.10.10.930 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 51.0 4.55e-01 96.2% 64.2%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.62 48.0 4.23e-01 86.5% 87.5%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.61 41.0 3.63e-01 71.2% 81.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 42.0 4.18e-01 98.1% 70.7%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.59 43.0 4.35e-01 78.8% 100.0%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 44.0 3.98e-01 98.1% 59.2%
4aktB00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.58 49.0 3.07e-01 100.0% 18.6%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.57 46.0 4.20e-01 100.0% 67.6%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.55 42.0 3.63e-01 92.3% 51.2%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 48.0 3.84e-01 100.0% 88.1%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 48.0 3.72e-01 100.0% 86.3%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.54 44.0 3.86e-01 90.4% 60.3%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 41.0 3.73e-01 98.1% 60.8%
5hiwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 44.0 2.70e-01 100.0% 51.9%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.53 41.0 3.46e-01 100.0% 91.5%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.52 45.0 3.46e-01 100.0% 77.2%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.52 42.0 3.95e-01 90.4% 86.2%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 42.0 3.42e-01 90.4% 70.7%
2kxpA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.51 38.0 3.14e-01 84.6% 44.9%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 45.0 2.94e-01 100.0% 35.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5061885 298.2.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like 0.81 57.0 3.71e-01 75.0% 18.6%
4092875 3978.1.1.1 ↗ alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_desaturase 0.70 60.0 3.67e-01 96.2% 15.7%
3974231 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.69 46.0 4.13e-01 75.0% 51.4%
3784262 616.1.1.29 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › PF28401 0.68 54.0 4.42e-01 86.5% 58.9%
3974625 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.68 45.0 4.08e-01 75.0% 51.4%
3219689 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.67 50.0 3.26e-01 80.8% 17.9%
3583169 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.67 47.0 4.09e-01 75.0% 48.8%
3664414 509.1.1.13 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 0.64 47.0 4.37e-01 78.8% 67.7%
3250375 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.63 45.0 4.10e-01 80.8% 62.7%
3505964 604.33.1.1 ↗ alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain › RGM_N 0.62 46.0 4.24e-01 86.5% 69.3%
3736648 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.61 52.0 3.10e-01 100.0% 14.3%
3934503 614.1.1.1 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.61 48.0 4.87e-01 88.5% 98.0%
3597496 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.60 45.0 3.05e-01 100.0% 22.7%
4258322 5086.1.1.189 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB 0.60 46.0 4.17e-01 84.6% 98.6%
2555592 5069.1.1.3 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I 0.56 45.0 3.93e-01 98.1% 57.6%
3675439 5059.1.1.52 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › PAP2 0.53 43.0 3.39e-01 100.0% 78.5%
4996069 604.10.1.0 ↗ alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac 0.53 47.0 3.95e-01 100.0% 78.9%
3720488 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.52 45.0 3.43e-01 100.0% 87.7%
3650120 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 43.0 2.77e-01 98.1% 17.9%