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OY979393.1__X__K58PH129C2_LOCUS1__00001
Bact-VirOY979393.1__X__K58PH129C2_LOCUS1__00001
Identity
- Accession:
- OY979393 ↗
- Kingdom:
- phage
Quality
87.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autotranscriptaviridae›
Przondovirus›
Klebsiella_phage_vB_Kpl_K58PH129C2
TaxID: 3071648
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-62
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08684.17 best | ocr | 97.0 | 8.50e-28 | 100.0% | 59.4% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s7zA01 | 1.20.120.780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr | 0.96 | 91.0 | 7.49e-01 | 100.0% | 61.4% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.77 | 50.0 | 4.23e-01 | 100.0% | 43.2% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.64 | 44.0 | 3.84e-01 | 72.6% | 69.5% |
| 1c02A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.63 | 54.0 | 4.05e-01 | 100.0% | 75.3% |
| 2rd9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.63 | 48.0 | 3.49e-01 | 83.9% | 82.9% |
| 6m20C01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.59 | 41.0 | 2.45e-01 | 72.6% | 15.3% |
| 1he1A00 | 1.20.120.260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain | 0.59 | 46.0 | 3.64e-01 | 87.1% | 83.0% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.59 | 49.0 | 4.48e-01 | 96.8% | 94.2% |
| 2zpaA04 | 1.20.120.890 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA(Met) cytidine acetyltransferase, tail domain | 0.57 | 45.0 | 3.51e-01 | 87.1% | 50.4% |
| 1rxqD00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.56 | 46.0 | 3.53e-01 | 98.4% | 93.5% |
| 1c6rA00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.54 | 37.0 | 3.24e-01 | 85.5% | 48.9% |
| 1lkxA02 | 1.10.10.820 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 31.0 | 3.20e-01 | 95.2% | 60.3% |
| 4m9aA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 38.0 | 3.02e-01 | 79.0% | 57.1% |
| 7r0kB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 45.0 | 2.99e-01 | 100.0% | 66.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2834128 | 101.13.1.1 ↗ | alpha arrays › HTH › B-form DNA mimic Ocr › B-form DNA mimic Ocr › ocr | 0.96 | 91.0 | 7.26e-01 | 100.0% | 56.4% |
| 4100091 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 44.0 | 2.88e-01 | 71.0% | 91.2% |
| 3925671 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 46.0 | 4.23e-01 | 98.4% | 62.5% |
| 3615391 | 3671.1.1.0 ↗ | alpha duplicates or obligate multimers › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain | 0.60 | 50.0 | 4.93e-01 | 100.0% | 95.7% |
| 3993770 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.58 | 48.0 | 3.19e-01 | 93.5% | 65.0% |
| 3190685 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.57 | 47.0 | 3.51e-01 | 100.0% | 63.2% |
| 3931077 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 44.0 | 2.94e-01 | 83.9% | 51.9% |
| 3741324 | 109.4.1.463 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF1765 | 0.55 | 49.0 | 3.27e-01 | 98.4% | 37.1% |
| 3470995 | 109.4.1.470 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 | 0.55 | 45.0 | 2.67e-01 | 87.1% | 25.0% |
| 4342305 | 206.1.2.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt | 0.54 | 44.0 | 2.94e-01 | 96.8% | 67.7% |
| 3225714 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.54 | 43.0 | 3.44e-01 | 100.0% | 78.7% |
| 4838669 | 529.1.1.1 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › ANATO | 0.51 | 44.0 | 4.26e-01 | 98.4% | 87.5% |