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OY979394.1__CAK6604009.1__K9PH25C2_LOCUS24__00024

Bact-Vir

OY979394.1__CAK6604009.1__K9PH25C2_LOCUS24__00024

Identity

Accession:
OY979394 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 159-206
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.95 83.0 7.58e-01 93.8% 78.7%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.93 84.0 7.66e-01 97.9% 98.4%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.92 80.0 7.17e-01 93.8% 92.2%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.92 82.0 4.83e-01 95.8% 16.5%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.91 73.0 6.63e-01 93.8% 66.1%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.91 78.0 5.81e-01 93.8% 66.1%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.90 77.0 5.82e-01 93.8% 42.6%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.90 70.0 6.70e-01 89.6% 74.1%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.90 76.0 7.59e-01 91.7% 98.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.89 72.0 5.47e-01 93.8% 39.6%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.89 76.0 5.93e-01 93.8% 49.0%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.88 75.0 6.25e-01 93.8% 60.5%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.88 76.0 7.13e-01 93.8% 79.3%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.88 79.0 6.09e-01 97.9% 96.0%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.88 75.0 4.84e-01 93.8% 22.7%
4qndA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.88 80.0 6.22e-01 100.0% 67.0%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.87 73.0 4.66e-01 93.8% 22.3%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.86 72.0 6.42e-01 93.8% 100.0%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.86 73.0 5.96e-01 93.8% 52.3%
3gnlB02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.85 72.0 6.42e-01 93.8% 88.2%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.85 75.0 5.18e-01 100.0% 77.6%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.85 75.0 4.90e-01 100.0% 52.8%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.84 71.0 5.25e-01 93.8% 38.5%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.84 71.0 6.58e-01 93.8% 73.8%
1he8A03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.84 68.0 5.13e-01 93.8% 38.7%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 68.0 5.86e-01 91.7% 61.8%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.83 69.0 6.51e-01 93.8% 96.6%
1qu7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.83 69.0 4.39e-01 93.8% 21.6%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.82 73.0 6.32e-01 100.0% 81.1%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 68.0 6.01e-01 95.8% 76.7%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 71.0 6.42e-01 95.8% 76.2%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.81 67.0 5.16e-01 91.7% 41.5%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.81 65.0 4.11e-01 91.7% 18.0%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 68.0 6.05e-01 97.9% 91.5%
3rmgA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.78 67.0 4.10e-01 97.9% 29.8%
2m6bA00 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.78 64.0 4.51e-01 93.8% 38.7%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 65.0 4.99e-01 93.8% 83.2%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 64.0 5.50e-01 95.8% 64.6%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.77 69.0 6.01e-01 100.0% 70.4%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.77 57.0 4.68e-01 93.8% 44.3%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 66.0 6.62e-01 100.0% 98.0%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.74 62.0 5.11e-01 93.8% 67.8%
4dylA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 60.0 3.87e-01 95.8% 19.2%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.73 57.0 5.17e-01 87.5% 65.2%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 59.0 4.69e-01 93.8% 52.9%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 59.0 5.57e-01 93.8% 94.9%
2aj4B03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.72 59.0 4.21e-01 100.0% 61.1%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.72 56.0 5.19e-01 91.7% 97.0%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.71 63.0 4.16e-01 100.0% 91.6%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.71 55.0 4.80e-01 89.6% 54.4%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.70 55.0 5.23e-01 85.4% 91.1%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 53.0 5.05e-01 93.8% 100.0%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.67 55.0 4.12e-01 93.8% 65.9%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 53.0 4.43e-01 100.0% 65.3%
2i76A02 1.10.1040.20 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › ProC-like, C-terminal domain 0.64 56.0 4.39e-01 100.0% 47.1%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.64 50.0 4.38e-01 95.8% 57.8%
2ca5A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 49.0 4.67e-01 93.8% 72.6%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 51.0 4.14e-01 100.0% 82.8%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.60 53.0 4.54e-01 100.0% 78.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218199 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.95 83.0 6.53e-01 93.8% 50.0%
4000281 192.20.1.0 alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD 0.94 83.0 6.28e-01 93.8% 45.0%
4180833 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.93 82.0 4.95e-01 93.8% 17.3%
3623143 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.93 85.0 6.89e-01 100.0% 89.4%
3623019 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.93 84.0 7.20e-01 95.8% 71.4%
3721457 3291.1.1.134 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › MPC 0.93 85.0 6.47e-01 97.9% 51.0%
4473366 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.93 81.0 6.83e-01 93.8% 60.0%
5081683 2002.3.1.3 a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 0.92 86.0 4.87e-01 100.0% 20.9%
3436926 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.92 80.0 6.82e-01 93.8% 62.2%
3602213 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.92 79.0 5.40e-01 91.7% 30.3%
3973285 3755.1.1.28 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › PF25876 0.92 78.0 5.44e-01 91.7% 100.0%
4949863 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.91 78.0 6.64e-01 93.8% 60.0%
5049284 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.91 78.0 5.67e-01 93.8% 95.8%
3253283 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.90 81.0 6.33e-01 97.9% 78.9%
2456957 192.13.1.1 alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 0.88 76.0 7.22e-01 93.8% 82.1%
5056427 3843.1.1.38 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › T4SS_pilin 0.88 75.0 5.63e-01 93.8% 40.9%
3598167 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.88 76.0 5.21e-01 93.8% 30.0%
3278856 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.88 76.0 7.55e-01 93.8% 90.0%
4396464 605.1.1.305 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Exonuc_VII_S 0.88 76.0 7.00e-01 93.8% 75.0%
3167364 2004.1.1.481 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.87 74.0 4.25e-01 93.8% 11.0%
4565383 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.87 78.0 7.74e-01 97.9% 94.0%
4669161 3812.1.1.16 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › Med12 0.87 78.0 5.50e-01 100.0% 66.4%
5016147 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.86 76.0 5.35e-01 95.8% 34.8%
4597007 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.86 73.0 7.54e-01 91.7% 97.8%
4544002 192.6.1.1 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.86 75.0 7.46e-01 95.8% 92.0%
4443102 604.11.1.1 alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S 0.86 77.0 6.69e-01 97.9% 67.1%
4446713 604.11.1.1 alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S 0.86 77.0 6.57e-01 100.0% 64.0%
4930182 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.85 72.0 4.69e-01 93.8% 23.6%
3876986 3291.1.1.84 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF28341 0.85 73.0 4.81e-01 93.8% 25.0%
3200787 5086.1.1.211 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF30554 0.84 76.0 4.69e-01 100.0% 19.2%
3637653 3755.3.1.481 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30554 0.84 75.0 5.19e-01 100.0% 31.6%
3250955 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.84 71.0 4.34e-01 95.8% 16.8%
4159687 304.58.1.0 a+b two layers › Alpha-beta plaits › FepE-like › FepE-like 0.83 70.0 4.26e-01 93.8% 16.1%
4985493 3834.1.1.0 alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain 0.83 71.0 4.42e-01 95.8% 18.4%
3451778 376.1.1.8 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.82 67.0 4.84e-01 91.7% 32.6%
4170866 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.82 68.0 7.01e-01 91.7% 97.8%
3869913 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.80 67.0 3.88e-01 95.8% 10.8%
3987966 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 65.0 4.98e-01 93.8% 40.9%
3486313 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.78 70.0 5.76e-01 100.0% 64.7%
3739640 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.76 65.0 5.06e-01 100.0% 51.8%
3969893 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.75 58.0 5.41e-01 91.7% 90.8%
4601944 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.74 60.0 5.29e-01 95.8% 64.0%
4026104 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 63.0 3.98e-01 100.0% 21.6%
4077176 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.70 56.0 4.73e-01 95.8% 54.4%
3964934 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.70 56.0 3.19e-01 95.8% 9.3%
3699313 6155.1.1.4 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.63 51.0 4.34e-01 100.0% 68.9%
D2 medium residues 21-84
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.86 58.0 6.48e-01 70.3% 88.2%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 53.0 5.44e-01 70.3% 82.0%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 53.0 5.46e-01 70.3% 81.4%
2lvsA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 56.0 6.24e-01 82.8% 100.0%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 5.61e-01 73.4% 87.0%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.63e-01 82.8% 81.8%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 53.0 4.48e-01 78.1% 75.0%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 52.0 4.36e-01 78.1% 71.2%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 4.70e-01 73.4% 63.2%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.70 49.0 5.21e-01 73.4% 83.9%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 53.0 4.47e-01 81.2% 76.6%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 4.67e-01 70.3% 73.1%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.69 48.0 3.72e-01 73.4% 75.4%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 4.43e-01 73.4% 58.5%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.14e-01 70.3% 59.1%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 44.0 4.90e-01 76.6% 100.0%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 3.37e-01 70.3% 39.7%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 3.86e-01 70.3% 52.7%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 44.0 3.22e-01 71.9% 64.2%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.61 42.0 4.11e-01 71.9% 81.4%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.61 41.0 4.56e-01 76.6% 97.8%
1g2hA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 43.0 4.40e-01 79.7% 83.6%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.59 40.0 3.15e-01 70.3% 38.9%
2hpvA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 40.0 2.89e-01 76.6% 37.7%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 38.0 3.75e-01 70.3% 71.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3168868 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 62.0 7.06e-01 71.9% 92.0%
5004841 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 64.0 6.39e-01 75.0% 73.8%
4992594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 60.0 6.94e-01 70.3% 100.0%
4990647 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 60.0 6.41e-01 71.9% 85.5%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.86 59.0 6.09e-01 71.9% 75.0%
4967740 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 69.0 7.42e-01 95.3% 100.0%
3925603 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 56.0 6.22e-01 70.3% 86.0%
4927434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 57.0 6.59e-01 70.3% 100.0%
3933546 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.84 55.0 5.20e-01 70.3% 57.3%
4297623 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 55.0 6.41e-01 70.3% 97.8%
5016985 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 55.0 6.38e-01 71.9% 97.8%
3997733 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 56.0 5.61e-01 71.9% 67.7%
3988724 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 56.0 5.83e-01 70.3% 78.3%
3583872 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 55.0 5.91e-01 70.3% 80.0%
3640035 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 65.0 5.84e-01 84.4% 62.4%
3603167 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.82 55.0 5.48e-01 71.9% 67.7%
5011648 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.82 60.0 6.67e-01 81.2% 100.0%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.81 55.0 5.86e-01 70.3% 83.6%
5004840 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 74.0 6.83e-01 100.0% 80.0%
5050152 101.1.3.35 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Terminase_5 0.79 58.0 6.49e-01 76.6% 100.0%
3932988 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 53.0 5.65e-01 71.9% 80.0%
3391053 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 53.0 6.24e-01 70.3% 100.0%
3964284 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 55.0 5.66e-01 76.6% 78.3%
4976345 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.78 53.0 5.48e-01 76.6% 75.0%
3411416 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 52.0 6.04e-01 71.9% 100.0%
3410877 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 55.0 5.36e-01 75.0% 67.1%
5060990 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.78 51.0 3.29e-01 70.3% 15.8%
5024511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 57.0 6.28e-01 82.8% 100.0%
4054648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 52.0 5.60e-01 70.3% 81.8%
5006645 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.77 52.0 5.39e-01 75.0% 75.0%
4162857 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.76 51.0 5.57e-01 70.3% 88.0%
3904156 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 51.0 5.80e-01 71.9% 100.0%
5050966 101.1.11.2 alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.76 51.0 4.47e-01 70.3% 49.5%
3944033 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.76 58.0 4.43e-01 84.4% 36.6%
4654073 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.76 51.0 4.86e-01 70.3% 62.7%
4965520 101.1.1.556 alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 0.75 52.0 5.55e-01 71.9% 96.4%
3789627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 5.63e-01 81.2% 81.5%
3987778 101.1.1.118 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS630 0.74 53.0 5.61e-01 78.1% 87.3%
3198859 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.73 57.0 5.86e-01 85.9% 88.3%
5077693 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.73 52.0 4.69e-01 73.4% 56.5%
4530329 101.1.8.14 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 0.73 49.0 5.09e-01 70.3% 78.3%
4626289 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.72 52.0 5.23e-01 76.6% 76.9%
4061265 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.72 63.0 4.60e-01 95.3% 51.9%
4031116 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.55e-01 81.2% 88.3%
4987329 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.71 49.0 4.46e-01 71.9% 55.3%
5045749 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.70 48.0 4.86e-01 71.9% 72.3%
3280630 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.70 48.0 4.94e-01 70.3% 78.3%
3985633 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.69 47.0 4.94e-01 73.4% 83.6%
D3 medium residues 85-153
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.64e-01 76.8% 84.7%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.39e-01 95.7% 83.7%
1af7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 45.0 3.31e-01 76.8% 54.6%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.62 44.0 4.66e-01 78.3% 86.9%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.22e-01 79.7% 75.3%
1sesA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 49.0 3.22e-01 100.0% 72.0%
2vx3C02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 36.0 2.51e-01 72.5% 22.4%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.05e-01 75.4% 49.2%
4id8A00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 3.51e-01 71.0% 100.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599746 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 46.0 4.30e-01 71.0% 80.0%
3643931 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.65e-01 75.4% 82.7%
5066705 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.70e-01 78.3% 78.6%
4417240 101.1.2.220 alpha arrays › HTH › HTH › winged helix domain › SSO1393-like_WHD 0.64 44.0 4.44e-01 72.5% 78.6%
4090010 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.63 45.0 4.85e-01 89.9% 94.5%
3687784 101.1.2.132 alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.63 47.0 4.49e-01 79.7% 77.5%
2634 101.1.2.42 alpha arrays › HTH › HTH › winged helix domain › FokI_D1 0.62 46.0 3.76e-01 79.7% 81.8%
4090347 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.61 45.0 3.15e-01 78.3% 78.2%
4093590 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.58 41.0 4.03e-01 75.4% 100.0%
4855119 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.58 41.0 3.77e-01 78.3% 69.4%
5019593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.92e-01 79.7% 78.8%
3712073 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.56 39.0 4.34e-01 87.0% 100.0%
4632722 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.56 39.0 2.66e-01 73.9% 39.6%
3518226 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.98e-01 98.6% 78.4%
2800426 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.55 35.0 3.67e-01 75.4% 69.2%
3694980 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 38.0 2.57e-01 75.4% 34.5%
3584449 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.54 41.0 3.96e-01 92.8% 73.8%
2643417 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.53 39.0 3.68e-01 95.7% 64.4%
5045825 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.65e-01 84.1% 69.4%