Back to structures

OY979399.1__CAK6604680.1__K13PH07C1S_LOCUS35__00035

Bact-Vir

OY979399.1__CAK6604680.1__K13PH07C1S_LOCUS35__00035

Identity

Accession:
OY979399 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-70
PDB
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 4.85e-01 100.0% 61.6%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.67 50.0 3.43e-01 81.8% 43.6%
2rk0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 47.0 3.83e-01 81.8% 40.5%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 44.0 4.61e-01 75.8% 77.6%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 50.0 3.16e-01 84.8% 85.9%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.37e-01 93.9% 80.0%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 50.0 3.33e-01 89.4% 50.2%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.63 48.0 3.61e-01 84.8% 54.9%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.62 51.0 3.13e-01 93.9% 29.1%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 46.0 3.64e-01 83.3% 57.5%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 52.0 3.32e-01 100.0% 48.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.60 48.0 3.83e-01 89.4% 90.0%
3d7rA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 44.0 2.89e-01 80.3% 28.0%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 49.0 3.61e-01 92.4% 73.3%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 4.20e-01 100.0% 99.2%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 52.0 4.01e-01 100.0% 53.4%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 3.13e-01 100.0% 38.2%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 41.0 4.08e-01 75.8% 77.5%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 3.74e-01 98.5% 45.2%
3n40P02 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.58 51.0 3.50e-01 97.0% 57.6%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.58 48.0 3.32e-01 95.5% 48.8%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 3.49e-01 100.0% 53.0%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 41.0 3.52e-01 74.2% 61.4%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.57 40.0 3.42e-01 87.9% 45.4%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.10e-01 97.0% 78.0%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 3.89e-01 100.0% 99.2%
2qsqB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.64e-01 84.8% 94.4%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 4.27e-01 93.9% 95.2%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.30e-01 100.0% 63.3%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.27e-01 75.8% 62.5%
1rl1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 4.17e-01 97.0% 68.5%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 47.0 2.95e-01 95.5% 25.8%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.54 45.0 3.82e-01 97.0% 67.8%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.14e-01 75.8% 65.1%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 44.0 3.51e-01 90.9% 48.9%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 3.37e-01 72.7% 62.8%
1a41A01 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.54 46.0 3.75e-01 97.0% 59.1%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 45.0 3.67e-01 93.9% 88.1%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 40.0 2.62e-01 92.4% 16.6%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 44.0 3.71e-01 93.9% 88.2%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.50e-01 93.9% 71.4%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.28e-01 100.0% 48.5%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.78e-01 98.5% 95.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.52 44.0 3.95e-01 100.0% 67.7%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.94e-01 97.0% 68.5%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.33e-01 87.9% 92.4%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 40.0 2.93e-01 89.4% 76.0%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.52 43.0 4.27e-01 93.9% 88.6%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.65e-01 92.4% 75.5%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 44.0 2.81e-01 97.0% 30.2%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.60e-01 92.4% 22.6%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.50 39.0 2.58e-01 90.9% 19.3%
4csbA00 2.40.128.480 Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein 0.50 43.0 3.69e-01 100.0% 80.5%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.50 44.0 3.05e-01 98.5% 95.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4497740 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.69 47.0 4.89e-01 90.9% 78.3%
4408024 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.69 46.0 4.80e-01 89.4% 76.7%
4211209 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.68 48.0 4.86e-01 89.4% 75.4%
4502878 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.67 46.0 4.78e-01 77.3% 78.3%
5058653 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 45.0 3.71e-01 71.2% 88.3%
3534391 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 45.0 3.25e-01 71.2% 69.5%
4204975 12.3.1.14 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.66 50.0 3.18e-01 83.3% 81.7%
3496967 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 52.0 4.12e-01 87.9% 90.0%
4049072 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.65 46.0 3.89e-01 74.2% 46.4%
4978331 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.64 42.0 4.21e-01 87.9% 64.3%
3280521 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.63 56.0 3.81e-01 100.0% 57.9%
4967263 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 41.0 3.52e-01 75.8% 40.9%
4945655 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 47.0 4.18e-01 84.8% 92.0%
4079885 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.61 46.0 4.09e-01 81.8% 89.5%
4289288 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.61 44.0 3.62e-01 78.8% 74.2%
3754695 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 45.0 3.70e-01 80.3% 47.2%
4999507 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.60 41.0 4.03e-01 89.4% 65.7%
4236900 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 42.0 3.46e-01 75.8% 43.4%
3987919 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.60 48.0 4.09e-01 89.4% 64.5%
3559236 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 42.0 4.48e-01 83.3% 89.1%
3942181 6150.1.1.0 a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 0.59 46.0 4.01e-01 86.4% 98.1%
4966092 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 40.0 3.33e-01 74.2% 37.9%
5035008 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 51.0 3.86e-01 100.0% 84.2%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.58 49.0 4.24e-01 97.0% 77.3%
3743202 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.58 48.0 4.03e-01 93.9% 91.7%
3948546 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 41.0 3.65e-01 75.8% 53.0%
5044391 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 4.35e-01 72.7% 100.0%
4391061 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 41.0 3.42e-01 75.8% 42.5%
3586827 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.58 46.0 3.88e-01 89.4% 80.9%
3943796 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 41.0 3.88e-01 75.8% 68.8%
3969569 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 38.0 3.92e-01 92.4% 75.0%
3619467 220.1.1.84 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.57 47.0 4.03e-01 93.9% 89.1%
4165211 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 40.0 3.19e-01 75.8% 37.2%
4234366 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 39.0 3.27e-01 74.2% 44.8%
3802207 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 47.0 3.05e-01 93.9% 29.2%
4380962 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 40.0 3.48e-01 75.8% 49.5%
4443040 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 40.0 3.49e-01 75.8% 50.0%
3942738 295.1.1.29 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.56 48.0 3.74e-01 100.0% 75.5%
5065013 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 39.0 3.07e-01 75.8% 35.0%
4984579 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 41.0 2.54e-01 81.8% 29.8%
4606688 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 40.0 3.89e-01 77.3% 77.3%
3482713 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.75e-01 97.0% 77.0%
3925946 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.88e-01 93.9% 20.8%
3590871 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 3.11e-01 92.4% 86.5%
5015845 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.55 47.0 3.55e-01 97.0% 60.0%
3985171 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 38.0 3.09e-01 74.2% 40.0%
3892091 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 45.0 3.31e-01 93.9% 32.1%
5044389 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.55 38.0 4.26e-01 71.2% 96.0%
3221538 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 2.99e-01 98.5% 22.5%
4432262 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 45.0 3.74e-01 95.5% 51.7%
3592578 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 48.0 2.96e-01 100.0% 64.2%
4941086 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 47.0 4.02e-01 98.5% 88.0%
3941442 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 39.0 3.18e-01 77.3% 43.8%
3616330 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.54 36.0 2.89e-01 84.8% 34.1%
4029948 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 43.0 3.61e-01 95.5% 50.0%
4373021 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.54 36.0 3.22e-01 75.8% 46.5%
4594302 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 37.0 3.21e-01 75.8% 47.0%
3958695 3484.1.1.2 a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.52 41.0 3.18e-01 89.4% 64.4%
5078248 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 38.0 3.79e-01 81.8% 75.7%
4190716 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 37.0 3.10e-01 78.8% 43.5%
3249483 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.80e-01 90.9% 94.4%
3636503 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.51 39.0 3.90e-01 92.4% 80.0%
3279508 283.1.1.4 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.51 43.0 3.47e-01 97.0% 81.5%
1877618 330.15.1.1 a+b two layers › dsRBD-like › VtrA protein periplasmic domain › VtrA protein periplasmic domain › VtrA_C 0.51 43.0 3.94e-01 98.5% 75.6%
3228053 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 38.0 4.10e-01 95.5% 100.0%
3605569 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.50 40.0 2.60e-01 92.4% 18.0%