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OY979414.1__CAK6604058.1__K61PH164C1_LOCUS3__00003

Bact-Vir

OY979414.1__CAK6604058.1__K61PH164C1_LOCUS3__00003

Identity

Accession:
OY979414 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Gansuvirus› Klebsiella_phage_vB_Kpn_K61PH164C1

TaxID: 3071663

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-78
PDB
Domain cluster: rep: MG004687.1__ATS93353.1__mutPK1A2_p54__00051__D23-76
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.71 45.0 4.51e-01 89.8% 63.3%
3aiiA02 2.40.240.100 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.66 56.0 5.20e-01 100.0% 92.2%
4p2bA04 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.65 56.0 4.84e-01 100.0% 96.3%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.64 44.0 4.17e-01 89.8% 57.4%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.63 48.0 4.67e-01 95.9% 73.2%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.62 44.0 3.84e-01 77.6% 50.7%
1tjyA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 49.0 3.53e-01 95.9% 83.4%
4mptA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 45.0 3.27e-01 100.0% 29.3%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.57 48.0 4.46e-01 98.0% 78.8%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 40.0 3.36e-01 75.5% 79.1%
7asgA01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.56 47.0 3.53e-01 98.0% 73.7%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.56 43.0 3.59e-01 85.7% 97.7%
3on7B00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.56 38.0 2.48e-01 75.5% 74.5%
3klkA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.55 45.0 3.23e-01 95.9% 44.7%
5wt7A00 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.55 43.0 3.24e-01 91.8% 70.0%
1am7A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.53 38.0 2.82e-01 83.7% 34.4%
4y1eA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 42.0 2.86e-01 89.8% 46.8%
5ziyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.51 42.0 2.90e-01 98.0% 82.5%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 41.0 2.64e-01 100.0% 68.9%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962327 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.69 55.0 5.29e-01 87.8% 80.0%
5021656 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.69 54.0 5.37e-01 87.8% 84.0%
3969735 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 55.0 4.98e-01 100.0% 90.0%
4158664 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.65 54.0 4.50e-01 95.9% 84.4%
3908568 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.63 40.0 4.33e-01 89.8% 80.0%
4059008 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.62 51.0 4.72e-01 95.9% 90.8%
4947784 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.61 50.0 4.08e-01 95.9% 85.0%
3600462 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 52.0 4.52e-01 100.0% 73.8%
3710465 239.1.1.6 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.61 51.0 3.70e-01 95.9% 58.6%
4955882 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.59 47.0 3.60e-01 100.0% 35.4%
4946739 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.59 48.0 4.49e-01 95.9% 93.8%
4129680 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.59 49.0 3.91e-01 100.0% 65.5%
5021658 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.58 42.0 4.28e-01 87.8% 82.0%
3941125 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.56 42.0 3.04e-01 83.7% 46.9%
5050699 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.55 45.0 3.51e-01 93.9% 45.2%
4287737 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.55 44.0 2.72e-01 89.8% 19.1%
3832887 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.55 43.0 3.67e-01 85.7% 81.9%
3908583 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.54 36.0 3.80e-01 89.8% 82.5%
5076337 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 45.0 4.28e-01 98.0% 93.3%
3598645 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 42.0 2.52e-01 91.8% 23.8%
3594793 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.80e-01 100.0% 39.0%
3649906 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.51 43.0 3.60e-01 100.0% 92.6%
3934729 1.1.1.3 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.51 40.0 3.19e-01 98.0% 72.0%
5072279 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 41.0 2.52e-01 100.0% 15.1%
4923979 304.102.1.5 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.51 39.0 2.80e-01 93.9% 50.3%
4669953 2002.3.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase 0.50 38.0 2.30e-01 87.8% 53.3%