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OY979429.1__CAK6606543.1__K32PH164C1_LOCUS94__00094

Bact-Vir

OY979429.1__CAK6606543.1__K32PH164C1_LOCUS94__00094

Identity

Accession:
OY979429 ↗
Kingdom:
phage

Quality

66.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Sugarlandvirus› Klebsiella_phage_vB_Kpl_K32PH164C1

TaxID: 3071647

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-75
PDB
Domain cluster: rep: JX195166.1__AFQ22207.1__My1_048__00048__D4-73
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.66 42.0 4.83e-01 87.3% 93.9%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.63 44.0 4.84e-01 87.3% 94.5%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 40.0 3.37e-01 98.6% 39.5%
4yubB01 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.57 49.0 3.34e-01 100.0% 35.9%
5aq0B00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.56 34.0 3.32e-01 83.1% 52.4%
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.56 38.0 4.21e-01 87.3% 94.3%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.55 34.0 3.90e-01 85.9% 89.8%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 39.0 3.84e-01 84.5% 86.1%
2ztbA02 2.60.40.4280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 33.0 2.99e-01 81.7% 46.5%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 4.08e-01 91.5% 96.8%
5jcvA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.51 38.0 2.95e-01 83.1% 54.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4554209 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.71 55.0 4.75e-01 98.6% 53.6%
3497509 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 5.32e-01 71.8% 100.0%
3970095 3430.1.1.0 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain 0.68 57.0 4.87e-01 100.0% 57.4%
4211416 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.64 54.0 4.75e-01 100.0% 61.8%
3580927 284.1.1.17 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › SBSPON_C 0.63 55.0 4.64e-01 100.0% 76.8%
4995774 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.62 36.0 4.25e-01 74.6% 100.0%
2775442 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 44.0 4.67e-01 88.7% 93.2%
3500623 375.12.1.1 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related › NAPRTase_C 0.60 53.0 4.37e-01 100.0% 89.2%
3361019 375.12.1.1 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related › NAPRTase_C 0.60 53.0 4.09e-01 100.0% 65.0%
3604593 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.44e-01 87.3% 94.5%
3903229 375.12.1.1 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related › NAPRTase_C 0.58 51.0 4.34e-01 100.0% 85.8%
177877 219.1.1.43 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase 0.56 41.0 3.10e-01 83.1% 60.2%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.56 43.0 4.41e-01 85.9% 100.0%
4032674 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.55 47.0 3.94e-01 97.2% 71.5%
4568780 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 40.0 4.32e-01 78.9% 100.0%
5032319 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.55 48.0 3.84e-01 100.0% 98.0%
3679932 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 34.0 3.43e-01 100.0% 58.7%
4984563 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.53 45.0 3.77e-01 95.8% 74.4%
3256891 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.53 33.0 3.26e-01 83.1% 58.7%
5059927 11.1.4.24 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarbopepD_reg_2 0.52 33.0 3.40e-01 83.1% 67.7%
4956295 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.52 43.0 3.66e-01 95.8% 73.6%
3169045 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.51 38.0 3.80e-01 83.1% 82.7%
4157313 10.12.1.61 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HgmA_N 0.50 42.0 2.94e-01 93.0% 48.9%