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Odv-e66

Euk-Vir

Apocheima_cinerarium_nucleopolyhedrovirus

Odv-e66__YP_006607780__Apocheima_cinerarium_nucleopolyhedrovirus__307461

Identity

Accession:: YP_006607780 ↗
Protein ID:: Odv-e66
Kingdom:: euk

Quality

86.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Apocheima_cinerarium_nucleopolyhedrovirus

TaxID: 307461

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-232

PDB

Domain cluster: rep: ODV-e66__YP_002854745__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467__D22-215

D2 medium residues 233-320

PDB

Domain cluster: rep: ODV-e66b__YP_003429368__Artogeia_rapae_granulovirus__362830__D334-361_374-417

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04850.20 best	Baculo_E66	112.8	2.50e-32	100.0%	21.4%

D3 medium residues 321-382_437-453

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04850.20 best	Baculo_E66	58.8	6.40e-16	78.5%	14.8%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1cb8A02	2.70.98.10	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 ›	0.78	71.0	4.94e-01	100.0%	92.7%
2q1fA03	2.70.98.10	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 ›	0.77	69.0	4.72e-01	100.0%	58.1%
4eqaC00	2.40.128.650	Mainly Beta › Beta Barrel › Lipocalin ›	0.52	43.0	3.56e-01	93.7%	52.7%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1005530	12.3.1.11 ↗	beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Baculo_E66	0.89	84.0	5.71e-01	100.0%	57.5%
3238202	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.53	39.0	2.82e-01	79.7%	61.3%
3966449	328.5.1.0 ↗	a+b two layers › IF3-like › SirA-like › SirA-like	0.52	43.0	3.61e-01	92.4%	55.7%
5046787	12.3.1.0 ↗	beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich	0.50	44.0	3.09e-01	100.0%	56.2%

D4 medium residues 454-545

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04850.20 best	Baculo_E66	86.6	2.30e-24	100.0%	20.7%

CATH (24)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vsmA02	2.70.98.100	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2	0.89	84.0	6.38e-01	100.0%	51.0%
2d73A01	2.70.98.10	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 ›	0.63	55.0	3.96e-01	100.0%	83.8%
1rwhA03	2.60.220.10	Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal	0.62	36.0	3.42e-01	91.3%	45.6%
3isrA02	2.60.40.2250	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.61	41.0	4.07e-01	95.7%	64.0%
4hkjD00	2.60.240.30	Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A ›	0.56	48.0	3.93e-01	97.8%	58.6%
1cl7I00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	39.0	4.10e-01	95.7%	84.1%
3kxyJ00	3.30.1460.10	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.55	46.0	4.18e-01	94.6%	97.7%
3d3yA02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.54	47.0	3.78e-01	100.0%	52.1%
6mv2A01	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	45.0	4.43e-01	98.9%	94.1%
3eoqB02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.53	45.0	3.73e-01	98.9%	55.7%
1v05A00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	36.0	3.60e-01	95.7%	66.7%
1ekrA00	3.30.70.640	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain	0.52	42.0	3.74e-01	92.4%	71.3%
1dn0D02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	39.0	3.88e-01	95.7%	78.7%
3g2fA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.52	35.0	3.64e-01	82.6%	74.7%
2gysA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	38.0	3.91e-01	91.3%	84.9%
6lpnA04	3.30.70.2740	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	39.0	3.88e-01	94.6%	78.9%
5erdA03	2.60.40.60	Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins	0.51	42.0	4.07e-01	98.9%	79.1%
2w59A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	40.0	3.92e-01	97.8%	81.0%
2k8qA00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	40.0	3.67e-01	91.3%	66.4%
5hmaA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.51	31.0	3.00e-01	77.2%	52.9%
1aqcB00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.50	36.0	3.26e-01	73.9%	77.9%
3ijtB00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.50	41.0	3.67e-01	94.6%	96.5%
4v2bA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	38.0	3.67e-01	98.9%	70.8%
3mdyA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.50	33.0	3.21e-01	87.0%	56.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4626429	304.112.1.10 ↗	a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N	0.55	44.0	3.57e-01	90.2%	94.2%
4660985	304.117.1.3 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › FakA-like_M	0.54	36.0	3.67e-01	88.0%	68.9%
2516379	319.1.1.3 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS	0.54	46.0	4.44e-01	98.9%	91.5%
3911670	11.1.1.97 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set	0.54	40.0	3.94e-01	97.8%	73.0%
5027481	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.53	34.0	3.56e-01	88.0%	72.5%
3907054	319.1.1.3 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS	0.53	44.0	4.32e-01	94.6%	92.0%
2641777	318.1.1.0 ↗	a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6	0.52	37.0	3.76e-01	91.3%	74.5%
4033498	309.1.1.4 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C	0.52	45.0	3.74e-01	100.0%	56.6%
4982133	304.5.1.7 ↗	a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179	0.52	34.0	3.61e-01	91.3%	77.5%
4030741	11.1.5.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f	0.51	42.0	3.49e-01	91.3%	69.4%
5028560	304.39.1.0 ↗	a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain	0.50	41.0	3.89e-01	89.1%	78.2%

D5 medium residues 546-646

PDB

Domain cluster: rep: ODV-E66B__YP_010086533__Spodoptera_exempta_nucleopolyhedrovirus__1242863__D570-654

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04850.20 best	Baculo_E66	98.6	5.30e-28	100.0%	23.3%