←Back to structures

Orf2

Euk-Vir

Torque_teno_zalophus_virus_1

Orf2__YP_002640215__Torque_teno_zalophus_virus_1__1218490

Identity

Accession:: YP_002640215 ↗
Protein ID:: Orf2
Kingdom:: euk

Quality

59.2 mean pLDDT

Taxonomy

Shotokuvirae› Commensaviricota› Cardeaviricetes› Sanitavirales› Anelloviridae› Sigmatorquevirus› Torque_teno_zalophus_virus_1

TaxID: 1218490

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bskB00	1.10.287.810	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains	0.63	41.0	4.46e-01	73.4%	80.0%
2lyyA00	1.10.287.3020	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	39.0	3.74e-01	87.3%	54.2%
3h8lA02	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.59	33.0	2.70e-01	72.2%	28.5%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3507551	192.5.1.0 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat	0.79	50.0	4.68e-01	93.7%	53.7%
3596530	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.77	48.0	3.27e-01	75.9%	19.2%
3237589	1203.1.2.0 ↗	alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2	0.76	52.0	4.43e-01	79.7%	45.8%
3494198	328.7.1.0 ↗	a+b two layers › IF3-like › Smr domain › Smr domain	0.75	63.0	4.64e-01	88.6%	36.8%
3611289	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.74	58.0	4.69e-01	84.8%	45.5%
4211999	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.73	47.0	3.95e-01	70.9%	40.0%
3598858	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.71	46.0	2.95e-01	70.9%	14.9%
3267613	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.69	46.0	3.22e-01	72.2%	23.0%
3929630	4323.1.1.1 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I	0.69	56.0	4.56e-01	91.1%	52.3%
3522521	5086.1.1.90 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I	0.68	58.0	4.70e-01	91.1%	58.6%
4378410	3755.3.1.320 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › V_ATPase_I	0.66	57.0	4.61e-01	100.0%	53.3%
3486052	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.65	40.0	2.87e-01	73.4%	21.3%
3705474	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.65	53.0	3.65e-01	87.3%	55.8%
4981145	5051.1.1.0 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like	0.62	48.0	3.12e-01	81.0%	60.0%
4017645	603.1.1.6 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2	0.60	53.0	4.05e-01	98.7%	76.2%
None	—		0.55	41.0	2.53e-01	79.7%	23.3%
3256165	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	43.0	3.00e-01	100.0%	84.0%
3717911	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	36.0	2.12e-01	74.7%	17.8%