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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00020
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00020
Identity
- Kingdom:
- phage
Quality
73.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-55
Domain cluster:
rep: OR521058.1__WNO25835.1__SEA_ALTADENA_13__00013__D4-50
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.77 | 59.0 | 6.17e-01 | 100.0% | 93.5% |
| 4v19I01 | 3.40.5.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain | 0.74 | 52.0 | 5.08e-01 | 100.0% | 68.4% |
| 2e9xD02 | 3.40.5.60 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.72 | 64.0 | 6.12e-01 | 100.0% | 88.3% |
| 4fsdA02 | 3.40.5.100 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.71 | 61.0 | 5.12e-01 | 100.0% | 57.0% |
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.69 | 54.0 | 3.33e-01 | 100.0% | 14.1% |
| 1vw4U00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.68 | 59.0 | 5.09e-01 | 100.0% | 65.9% |
| 5jouA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 46.0 | 4.04e-01 | 92.2% | 50.6% |
| 2f2hA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 45.0 | 4.57e-01 | 92.2% | 81.2% |
| 2cjsA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.61 | 49.0 | 3.69e-01 | 100.0% | 80.4% |
| 1iv8A05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 38.0 | 3.63e-01 | 92.2% | 53.0% |
| 7z0kB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 48.0 | 4.53e-01 | 100.0% | 93.8% |
| 1x43A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 48.0 | 4.60e-01 | 100.0% | 91.9% |
| 3cjxA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 47.0 | 3.47e-01 | 100.0% | 34.0% |
| 3bwnD01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 39.0 | 3.02e-01 | 82.4% | 64.6% |
| 4fssB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 46.0 | 4.39e-01 | 100.0% | 95.1% |
| 2hoxA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 42.0 | 3.38e-01 | 92.2% | 54.0% |
| 1o6zA01 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.52 | 37.0 | 2.73e-01 | 78.4% | 95.7% |
| 1jzdC00 | 2.60.40.1250 | Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain | 0.52 | 38.0 | 3.06e-01 | 84.3% | 72.0% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 40.0 | 2.61e-01 | 96.1% | 88.3% |
| 1zuyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 43.0 | 4.19e-01 | 100.0% | 100.0% |
| 7zj3D01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 37.0 | 3.26e-01 | 80.4% | 55.6% |
| 3g7kB02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 40.0 | 2.79e-01 | 90.2% | 59.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078669 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.91 | 84.0 | 7.96e-01 | 100.0% | 93.2% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.79 | 62.0 | 6.50e-01 | 98.0% | 97.8% |
| 4956454 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.77 | 60.0 | 5.88e-01 | 100.0% | 78.2% |
| 3593781 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.76 | 60.0 | 5.92e-01 | 100.0% | 81.8% |
| 5023430 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.76 | 64.0 | 6.08e-01 | 100.0% | 81.7% |
| 4988095 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.76 | 63.0 | 6.38e-01 | 100.0% | 96.0% |
| 4981952 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.76 | 60.0 | 6.06e-01 | 100.0% | 90.0% |
| 4927873 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.75 | 60.0 | 5.70e-01 | 100.0% | 75.0% |
| 5000438 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.75 | 60.0 | 5.39e-01 | 100.0% | 64.3% |
| 3595897 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.74 | 54.0 | 5.36e-01 | 100.0% | 74.5% |
| 4967982 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.73 | 56.0 | 5.89e-01 | 98.0% | 100.0% |
| 3703797 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.73 | 55.0 | 5.41e-01 | 100.0% | 78.2% |
| 3705471 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.72 | 54.0 | 5.37e-01 | 100.0% | 78.2% |
| 3716713 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.72 | 58.0 | 5.92e-01 | 100.0% | 94.0% |
| 5033467 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.72 | 56.0 | 5.73e-01 | 100.0% | 95.8% |
| 3251095 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.71 | 54.0 | 5.15e-01 | 100.0% | 71.7% |
| 3270868 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.71 | 53.0 | 5.22e-01 | 100.0% | 76.4% |
| 4048813 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.71 | 52.0 | 5.18e-01 | 100.0% | 76.4% |
| 4057802 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.71 | 54.0 | 5.59e-01 | 98.0% | 95.6% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.71 | 52.0 | 5.47e-01 | 96.1% | 93.3% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.70 | 52.0 | 5.41e-01 | 98.0% | 95.6% |
| 5036149 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.70 | 53.0 | 5.57e-01 | 98.0% | 97.8% |
| 4993371 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.69 | 53.0 | 5.43e-01 | 100.0% | 90.0% |
| 4536596 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.69 | 54.0 | 5.51e-01 | 100.0% | 93.8% |
| 4641420 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.69 | 54.0 | 4.57e-01 | 100.0% | 50.0% |
| 1346119 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.69 | 54.0 | 5.40e-01 | 100.0% | 88.2% |
| 4269273 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.68 | 53.0 | 5.50e-01 | 96.1% | 97.8% |
| 4280403 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 51.0 | 5.25e-01 | 96.1% | 95.6% |
| 5066664 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.67 | 51.0 | 5.31e-01 | 96.1% | 95.6% |
| 2404978 | 12.1.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd | 0.66 | 47.0 | 3.90e-01 | 82.4% | 41.2% |
| 4031645 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.60 | 47.0 | 4.79e-01 | 100.0% | 96.0% |
| 4026146 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 48.0 | 4.36e-01 | 100.0% | 97.4% |
| 3348024 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.58 | 48.0 | 3.57e-01 | 100.0% | 58.0% |
| 3411973 | 1116.1.1.2 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD | 0.56 | 42.0 | 2.97e-01 | 88.2% | 67.8% |
| 4263982 | 375.1.1.302 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP | 0.55 | 38.0 | 3.71e-01 | 100.0% | 67.3% |
| 3826676 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.55 | 44.0 | 2.78e-01 | 100.0% | 25.5% |
| 3475881 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 4.22e-01 | 100.0% | 74.3% |
| 3189679 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 42.0 | 3.33e-01 | 100.0% | 36.9% |
| 3607707 | 12.1.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd | 0.54 | 42.0 | 3.48e-01 | 92.2% | 49.5% |
| 1145963 | 4012.3.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI | 0.54 | 46.0 | 3.77e-01 | 100.0% | 58.0% |
| 4306250 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.52 | 36.0 | 3.39e-01 | 100.0% | 55.7% |
| 3785134 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 37.0 | 2.55e-01 | 80.4% | 30.9% |
| 3368067 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.51 | 39.0 | 2.55e-01 | 100.0% | 26.2% |
| 3180843 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.50 | 37.0 | 2.62e-01 | 82.4% | 34.7% |
| 4002849 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.50 | 33.0 | 3.46e-01 | 94.1% | 80.0% |
| 3597664 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.50 | 31.0 | 3.27e-01 | 94.1% | 68.9% |