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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00082
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00082
Identity
- Kingdom:
- phage
Quality
71.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-55
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zcjA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.70 | 59.0 | 4.08e-01 | 92.7% | 45.7% |
| 5djsA03 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.67 | 47.0 | 3.30e-01 | 74.5% | 54.8% |
| 1vkzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.67 | 59.0 | 4.45e-01 | 100.0% | 52.2% |
| 2x4kA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.65 | 47.0 | 4.52e-01 | 90.9% | 67.7% |
| 2efjA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 44.0 | 3.01e-01 | 78.2% | 75.7% |
| 4as2A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.62 | 50.0 | 3.27e-01 | 87.3% | 92.4% |
| 2y2wC02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 50.0 | 3.02e-01 | 90.9% | 75.3% |
| 2vsyA03 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 46.0 | 3.19e-01 | 83.6% | 52.5% |
| 1bkcE00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.60 | 50.0 | 3.33e-01 | 100.0% | 66.0% |
| 4ywkA01 | 3.30.1640.10 | Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 | 0.54 | 45.0 | 3.75e-01 | 92.7% | 57.7% |
| 4wczA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.53 | 38.0 | 3.92e-01 | 78.2% | 92.6% |
| 6j5yA00 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.50 | 40.0 | 2.80e-01 | 100.0% | 42.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040221 | 206.1.2.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt | 0.78 | 70.0 | 4.33e-01 | 100.0% | 22.3% |
| 3662083 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 59.0 | 4.25e-01 | 85.5% | 31.0% |
| 4961956 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.74 | 60.0 | 3.69e-01 | 89.1% | 44.1% |
| 4466948 | 5060.1.1.2 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › DUF2764 | 0.71 | 54.0 | 3.82e-01 | 81.8% | 28.7% |
| 4999467 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.70 | 60.0 | 3.78e-01 | 96.4% | 93.8% |
| None | — | 0.68 | 57.0 | 3.68e-01 | 92.7% | 37.4% | |
| 3461776 | 207.1.1.133 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_14 | 0.67 | 51.0 | 3.29e-01 | 85.5% | 18.0% |
| 5037015 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.65 | 43.0 | 3.28e-01 | 72.7% | 28.1% |
| 4099547 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.62 | 46.0 | 3.40e-01 | 78.2% | 33.3% |
| 3607851 | 9.15.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD | 0.59 | 52.0 | 3.30e-01 | 96.4% | 30.9% |
| 3384625 | 148.1.3.207 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7751 | 0.55 | 44.0 | 4.27e-01 | 100.0% | 95.4% |