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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00136
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00136
Identity
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-78_171-201
Domain cluster:
rep: H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00447__D193-263_331-365
D2
high
residues 82-155
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5d8cA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.76 | 54.0 | 4.51e-01 | 100.0% | 43.7% |
| 4b43A01 | 1.10.10.2480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.76 | 51.0 | 5.30e-01 | 100.0% | 75.0% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.76 | 54.0 | 5.48e-01 | 100.0% | 76.4% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.74 | 52.0 | 5.45e-01 | 100.0% | 80.6% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.74 | 52.0 | 5.31e-01 | 100.0% | 75.3% |
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.72 | 50.0 | 4.22e-01 | 100.0% | 42.3% |
| 6i7dB01 | 6.20.240.20 | Special › Other non-globular › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.95e-01 | 91.9% | 91.5% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.53e-01 | 93.2% | 69.9% |
| 7q5yD01 | 3.30.70.3270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 3.04e-01 | 100.0% | 45.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4564454 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.78 | 55.0 | 4.90e-01 | 100.0% | 52.4% |
| 4929856 | 101.1.9.18 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 | 0.77 | 54.0 | 5.08e-01 | 100.0% | 60.0% |
| 3288205 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.77 | 54.0 | 5.29e-01 | 100.0% | 67.5% |
| 3280706 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.77 | 54.0 | 5.26e-01 | 100.0% | 67.5% |
| 3387406 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.75 | 52.0 | 4.66e-01 | 100.0% | 51.4% |
| 4950846 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.73 | 48.0 | 5.55e-01 | 98.6% | 100.0% |
| 2876157 | 101.1.9.105 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 | 0.71 | 48.0 | 5.48e-01 | 100.0% | 100.0% |
| 4027085 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.63 | 45.0 | 4.77e-01 | 100.0% | 88.9% |
| 3485507 | 2004.1.1.230 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like | 0.55 | 46.0 | 3.38e-01 | 97.3% | 72.4% |
| 5016375 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.52 | 36.0 | 2.79e-01 | 74.3% | 99.5% |
| 3947139 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.51 | 41.0 | 2.87e-01 | 97.3% | 89.7% |
| 4030787 | 605.1.1.303 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Terminase_4 | 0.51 | 36.0 | 3.26e-01 | 73.0% | 79.0% |
D3
high
residues 233-290
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.66 | 57.0 | 5.07e-01 | 100.0% | 95.3% |
| 4nj8A01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.64 | 47.0 | 4.79e-01 | 81.0% | 100.0% |
| 3f6oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 46.0 | 4.10e-01 | 81.0% | 52.7% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 47.0 | 4.26e-01 | 87.9% | 59.8% |
| 5jrtA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.60 | 50.0 | 4.89e-01 | 96.6% | 89.1% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 51.0 | 5.09e-01 | 96.6% | 100.0% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.59 | 36.0 | 3.67e-01 | 89.7% | 61.4% |
| 2ii2A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.59 | 50.0 | 4.22e-01 | 94.8% | 76.5% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.58 | 48.0 | 3.93e-01 | 93.1% | 63.6% |
| 1gxyA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.57 | 42.0 | 2.94e-01 | 84.5% | 87.4% |
| 4xkyA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 46.0 | 3.05e-01 | 100.0% | 98.0% |
| 4evfA04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.55 | 44.0 | 4.20e-01 | 87.9% | 98.6% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 41.0 | 3.94e-01 | 79.3% | 89.6% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 46.0 | 3.70e-01 | 98.3% | 89.3% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 37.0 | 3.53e-01 | 100.0% | 62.8% |
| 4evfA01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.51 | 40.0 | 3.85e-01 | 91.4% | 98.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4443506 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.69 | 59.0 | 3.59e-01 | 100.0% | 15.1% |
| 3982032 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.67 | 46.0 | 4.21e-01 | 74.1% | 81.2% |
| 5060746 | 4159.1.1.0 ↗ | alpha arrays › SP0561-like › SP0561-like › SP0561-like | 0.65 | 53.0 | 5.16e-01 | 91.4% | 83.1% |
| 3507622 | 143.1.1.1 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABP | 0.65 | 46.0 | 4.26e-01 | 75.9% | 82.7% |
| 5038055 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.63 | 48.0 | 4.33e-01 | 84.5% | 72.9% |
| 4139052 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 49.0 | 4.66e-01 | 100.0% | 76.0% |
| 5045277 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 48.0 | 4.52e-01 | 93.1% | 74.7% |
| 3534214 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.57 | 48.0 | 4.25e-01 | 94.8% | 90.6% |
| 3826235 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.56 | 47.0 | 4.27e-01 | 94.8% | 98.7% |
| 4996856 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 44.0 | 4.37e-01 | 100.0% | 84.6% |
| 4193698 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.56 | 39.0 | 3.85e-01 | 84.5% | 67.2% |
| 4418429 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.54 | 46.0 | 4.23e-01 | 100.0% | 98.8% |
| 3630004 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.53 | 44.0 | 4.15e-01 | 96.6% | 100.0% |
| 4094836 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.53 | 45.0 | 3.28e-01 | 100.0% | 36.1% |
| 3706174 | 109.3.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 | 0.53 | 45.0 | 3.31e-01 | 96.6% | 63.7% |
| 3163613 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 42.0 | 4.07e-01 | 100.0% | 84.3% |
| 1873306 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.51 | 40.0 | 3.87e-01 | 93.1% | 98.6% |