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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00143
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00143
Identity
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-78
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wz0A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 44.0 | 3.81e-01 | 72.9% | 74.3% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.39e-01 | 85.7% | 43.0% |
| 6c6bB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 36.0 | 2.51e-01 | 70.0% | 32.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3465422 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.81 | 57.0 | 4.49e-01 | 72.9% | 97.0% |
| 3250122 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.72 | 55.0 | 4.84e-01 | 81.4% | 83.0% |
| 4019686 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.70 | 56.0 | 3.60e-01 | 87.1% | 67.0% |
| 5063076 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.66 | 41.0 | 2.97e-01 | 74.3% | 23.8% |
| 3688647 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.64 | 48.0 | 4.35e-01 | 91.4% | 59.1% |
| 3622162 | 192.2.1.34 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › CpG_bind_C | 0.64 | 60.0 | 4.20e-01 | 100.0% | 53.5% |
| 3297391 | 533.1.1.1 ↗ | alpha bundles › Arp2/3 complex 21 kDa subunit ARPC3 › Arp2/3 complex 21 kDa subunit ARPC3 › Arp2/3 complex 21 kDa subunit ARPC3 › P21-Arc | 0.64 | 43.0 | 3.19e-01 | 70.0% | 81.0% |
| 3910376 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.61 | 42.0 | 3.98e-01 | 71.4% | 94.1% |
| None | — | 0.59 | 43.0 | 2.86e-01 | 74.3% | 26.9% | |
| 4880604 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.56 | 45.0 | 3.62e-01 | 90.0% | 57.7% |
| 4012449 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.53 | 41.0 | 3.84e-01 | 81.4% | 67.1% |