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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00163
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00163
Identity
- Kingdom:
- phage
Quality
95.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-89
Domain cluster:
rep: P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00257__D45-105
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.78 | 47.0 | 4.57e-01 | 71.6% | 54.7% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.74 | 46.0 | 4.43e-01 | 74.6% | 55.3% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.72 | 61.0 | 4.67e-01 | 94.0% | 58.7% |
| 3zxxA00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.69 | 62.0 | 4.08e-01 | 98.5% | 81.1% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 47.0 | 4.35e-01 | 71.6% | 64.3% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.68 | 50.0 | 4.41e-01 | 80.6% | 56.3% |
| 1d0cA03 | 3.90.1230.10 | Alpha Beta › Alpha-Beta Complex › Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3 › Nitric Oxide Synthase; Chain A, domain 3 | 0.66 | 36.0 | 3.29e-01 | 97.0% | 40.4% |
| 1gjsA00 | 1.10.8.40 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain | 0.63 | 44.0 | 4.54e-01 | 100.0% | 76.9% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.61 | 41.0 | 3.83e-01 | 70.1% | 81.4% |
| 4jbeB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.61 | 48.0 | 3.20e-01 | 85.1% | 55.1% |
| 2vy1A00 | 1.10.4180.10 | Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY | 0.59 | 48.0 | 3.56e-01 | 86.6% | 36.2% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 51.0 | 4.25e-01 | 95.5% | 91.4% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.59 | 44.0 | 3.93e-01 | 83.6% | 57.7% |
| 1c3cA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.59 | 51.0 | 4.66e-01 | 100.0% | 82.4% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 49.0 | 4.17e-01 | 94.0% | 79.5% |
| 3bg2A02 | 1.10.3550.10 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like | 0.58 | 45.0 | 3.83e-01 | 85.1% | 92.0% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.58 | 42.0 | 3.87e-01 | 77.6% | 60.2% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.57 | 49.0 | 4.21e-01 | 100.0% | 68.8% |
| 2yb1A02 | 1.10.150.650 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 38.0 | 3.76e-01 | 80.6% | 68.5% |
| 4xt1A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 44.0 | 3.00e-01 | 95.5% | 39.9% |
| 1dkqA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 38.0 | 3.15e-01 | 76.1% | 51.6% |
| 4ybaA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 38.0 | 3.67e-01 | 74.6% | 72.7% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 43.0 | 4.03e-01 | 88.1% | 77.4% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 47.0 | 3.92e-01 | 98.5% | 80.5% |
| 4ottA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.53 | 43.0 | 3.66e-01 | 94.0% | 74.4% |
| 2f2gA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.53 | 43.0 | 3.04e-01 | 89.6% | 74.4% |
| 1ni5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.52 | 37.0 | 3.46e-01 | 74.6% | 72.1% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 38.0 | 4.01e-01 | 94.0% | 85.5% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.52 | 38.0 | 3.78e-01 | 79.1% | 85.9% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.50 | 43.0 | 2.74e-01 | 100.0% | 87.7% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.50 | 40.0 | 4.05e-01 | 86.6% | 87.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967007 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.80 | 54.0 | 3.68e-01 | 83.6% | 20.9% |
| 3963664 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.79 | 54.0 | 3.61e-01 | 83.6% | 20.4% |
| 4337254 | 3755.4.1.79 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › eIF3h_C | 0.75 | 45.0 | 3.67e-01 | 70.1% | 35.7% |
| 3948923 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.75 | 51.0 | 5.35e-01 | 70.1% | 88.3% |
| 4246249 | 3748.1.1.3 ↗ | extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C | 0.74 | 44.0 | 3.41e-01 | 70.1% | 29.3% |
| 3186778 | 103.11.1.1 ↗ | alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N | 0.68 | 45.0 | 4.89e-01 | 73.1% | 83.6% |
| 4976690 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 45.0 | 5.00e-01 | 74.6% | 92.0% |
| 4148430 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.67 | 47.0 | 5.23e-01 | 80.6% | 100.0% |
| 4243302 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.66 | 49.0 | 5.28e-01 | 95.5% | 98.2% |
| 3635537 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 44.0 | 4.83e-01 | 74.6% | 87.3% |
| 4557139 | 2492.1.1.56 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › eIF3h_C | 0.64 | 43.0 | 2.69e-01 | 74.6% | 13.4% |
| 3186616 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.63 | 45.0 | 4.56e-01 | 82.1% | 76.9% |
| 3638504 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.63 | 43.0 | 2.65e-01 | 74.6% | 12.9% |
| 3240158 | 3525.1.1.0 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain | 0.62 | 46.0 | 4.23e-01 | 80.6% | 83.3% |
| 5011341 | 4049.1.1.0 ↗ | alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like | 0.62 | 49.0 | 5.06e-01 | 95.5% | 100.0% |
| 3705785 | 3050.1.1.30 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › TMEM254 | 0.61 | 51.0 | 4.58e-01 | 92.5% | 67.4% |
| 4987757 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.61 | 47.0 | 4.11e-01 | 85.1% | 75.0% |
| 3291916 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.60 | 41.0 | 2.65e-01 | 74.6% | 15.2% |
| 4442514 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.60 | 41.0 | 4.54e-01 | 79.1% | 96.0% |
| 3603732 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.60 | 43.0 | 4.41e-01 | 77.6% | 98.5% |
| 5017752 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.60 | 46.0 | 3.22e-01 | 83.6% | 26.4% |
| 3526937 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 49.0 | 3.89e-01 | 94.0% | 67.9% |
| 3219554 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.58 | 39.0 | 4.38e-01 | 71.6% | 94.0% |
| 3450714 | 589.1.1.7 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › DUF247 | 0.57 | 50.0 | 4.12e-01 | 97.0% | 83.9% |
| 3805859 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 33.0 | 3.45e-01 | 74.6% | 63.3% |
| 4009124 | 639.2.1.5 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 | 0.55 | 39.0 | 4.11e-01 | 74.6% | 90.0% |
| 3995128 | 3722.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain | 0.55 | 47.0 | 3.23e-01 | 95.5% | 39.1% |
| 4998780 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.53 | 47.0 | 3.12e-01 | 100.0% | 28.0% |
| 5034435 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.52 | 47.0 | 4.44e-01 | 98.5% | 88.7% |
| 4954910 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.52 | 44.0 | 4.12e-01 | 95.5% | 76.2% |
| 5071731 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.52 | 46.0 | 3.63e-01 | 98.5% | 100.0% |
| 3531209 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.52 | 42.0 | 4.15e-01 | 86.6% | 91.4% |
| 3169347 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.51 | 36.0 | 2.40e-01 | 94.0% | 18.5% |