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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00176
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00176
Identity
- Kingdom:
- phage
Quality
93.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-67
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g23A01 | 3.40.50.10740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Murein tetrapeptidase LD-carboxypeptidase, N-terminal domain | 0.51 | 41.0 | 3.02e-01 | 94.4% | 73.3% |
| 3ggdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 38.0 | 2.56e-01 | 85.2% | 68.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3951408 | 206.1.3.7 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp | 0.53 | 43.0 | 2.78e-01 | 94.4% | 26.9% |
| 4984286 | 206.1.3.41 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter | 0.52 | 43.0 | 2.94e-01 | 100.0% | 65.1% |
| 4582077 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.50 | 42.0 | 3.88e-01 | 100.0% | 94.7% |
| 4350483 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.50 | 40.0 | 3.43e-01 | 100.0% | 51.4% |
D2
high
residues 72-176
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00476__D2-127
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 38.0 | 4.04e-01 | 73.3% | 64.9% |
| 1rvkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 36.0 | 3.57e-01 | 94.3% | 58.6% |
| 2bmoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 3.23e-01 | 88.6% | 38.7% |
| 6w08A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.56 | 51.0 | 3.52e-01 | 100.0% | 93.4% |
| 3buxB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 32.0 | 3.42e-01 | 99.0% | 65.2% |
| 3q6bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.53 | 32.0 | 3.61e-01 | 99.0% | 82.4% |
| 4v1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 38.0 | 2.65e-01 | 94.3% | 22.8% |
| 2fhzA00 | 3.30.190.30 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › | 0.51 | 41.0 | 4.11e-01 | 86.7% | 84.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4941973 | 314.1.1.4 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2c | 0.61 | 38.0 | 2.45e-01 | 97.1% | 13.4% |
| 3953553 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.58 | 32.0 | 3.29e-01 | 73.3% | 53.3% |
| 3334247 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 28.0 | 2.79e-01 | 89.5% | 47.3% |
| 3917555 | 109.26.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_NUP160_120_M | 0.53 | 44.0 | 3.69e-01 | 90.5% | 58.4% |
| 4022202 | 109.4.1.1588 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595, PF30849 | 0.52 | 41.0 | 2.36e-01 | 87.6% | 16.9% |
| 3464233 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.52 | 26.0 | 3.01e-01 | 89.5% | 63.7% |
| 4325844 | 5085.1.1.2 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 | 0.51 | 36.0 | 2.33e-01 | 96.2% | 16.7% |
| 3956039 | 2004.1.1.77 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87,HerA_C | 0.51 | 47.0 | 3.08e-01 | 100.0% | 27.5% |
| 3684919 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.51 | 43.0 | 2.84e-01 | 94.3% | 61.5% |
| None | — | 0.50 | 38.0 | 3.23e-01 | 81.0% | 56.1% |