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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00201

Bact-Vir

P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00201

Identity

Kingdom:
phage

Quality

87.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-211
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01507.26 best PAPS_reduct 26.4 8.70e-06 98.1% 80.6%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ni5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.81 59.0 5.65e-01 100.0% 66.5%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.79 58.0 5.75e-01 100.0% 71.0%
4bwvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.76 54.0 5.26e-01 100.0% 65.6%
3tnjA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.75 44.0 5.77e-01 100.0% 100.0%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.71 45.0 5.65e-01 99.0% 100.0%
1jmvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.68 46.0 5.50e-01 99.5% 100.0%
2jaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 41.0 5.18e-01 96.1% 100.0%
7uuim01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 47.0 5.26e-01 95.6% 93.0%
2z3vA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 43.0 5.28e-01 97.1% 99.3%
3s3tA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 46.0 5.39e-01 98.1% 99.3%
3qyfA01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.65 46.0 5.13e-01 98.5% 90.9%
2l5oA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 33.0 3.84e-01 98.1% 67.3%
3erwF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 33.0 4.05e-01 97.1% 77.1%
3hgmA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 44.0 5.19e-01 96.6% 100.0%
1b93B00 3.40.50.1380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain 0.62 35.0 4.06e-01 98.1% 74.8%
1t9hA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 42.0 4.86e-01 99.0% 97.9%
1fzrA00 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.60 28.0 3.45e-01 87.4% 69.0%
1vjtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 31.0 4.11e-01 97.1% 93.1%
3lupA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 34.0 3.89e-01 99.0% 78.1%
5jioA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 40.0 4.06e-01 99.0% 71.8%
5hsgA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 39.0 4.40e-01 94.7% 95.0%
6oibA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 31.0 3.59e-01 80.6% 76.2%
3h8lA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 32.0 3.72e-01 77.2% 80.8%
1j5pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 31.0 3.75e-01 99.0% 89.2%
4uulA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 37.0 4.27e-01 94.7% 98.7%
2dc1A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 31.0 3.71e-01 99.5% 86.7%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 38.0 4.24e-01 98.5% 96.9%
1p3y100 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.52 38.0 4.14e-01 100.0% 90.6%
4aurA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 35.0 3.24e-01 71.8% 52.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3489889 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.83 53.0 6.01e-01 82.5% 82.5%
3700098 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.81 51.0 5.09e-01 100.0% 60.7%
4499405 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.81 59.0 5.51e-01 100.0% 62.0%
4051591 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.80 58.0 5.47e-01 100.0% 63.8%
3614597 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.80 51.0 5.07e-01 100.0% 62.4%
4044690 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.80 60.0 5.60e-01 100.0% 64.5%
4337374 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.80 58.0 5.53e-01 100.0% 65.1%
3273951 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.79 61.0 5.56e-01 100.0% 61.5%
4885769 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.79 60.0 5.66e-01 100.0% 67.2%
4678704 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.79 58.0 5.54e-01 100.0% 66.0%
5035964 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.79 64.0 5.56e-01 100.0% 59.0%
4943565 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 64.0 5.82e-01 100.0% 65.7%
5011726 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 63.0 5.50e-01 100.0% 59.3%
4425942 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 59.0 5.11e-01 100.0% 53.6%
4203886 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 59.0 5.32e-01 100.0% 59.6%
4178958 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 58.0 5.57e-01 100.0% 67.8%
5035814 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 61.0 5.30e-01 100.0% 56.6%
4582525 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 57.0 5.43e-01 100.0% 65.5%
4386055 2005.1.1.47 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.78 55.0 5.06e-01 100.0% 58.0%
4994415 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.77 61.0 5.72e-01 100.0% 68.8%
None 0.77 61.0 5.62e-01 100.0% 64.6%
4312317 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.77 60.0 5.64e-01 100.0% 67.9%
4124153 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.77 61.0 5.29e-01 100.0% 56.0%
4466198 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.77 58.0 5.44e-01 100.0% 64.9%
3174284 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.77 61.0 5.18e-01 100.0% 52.8%
4383441 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.77 61.0 5.30e-01 100.0% 56.3%
4351211 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.76 59.0 5.32e-01 100.0% 61.1%
4484951 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.76 58.0 5.29e-01 100.0% 61.1%
5051940 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.75 62.0 5.73e-01 100.0% 68.6%
4965301 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.75 47.0 5.93e-01 96.6% 100.0%
4977081 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.75 63.0 5.39e-01 100.0% 57.1%
4010166 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.74 47.0 5.55e-01 100.0% 89.7%
5010573 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.74 46.0 5.62e-01 98.1% 94.1%
4963305 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.74 44.0 5.47e-01 100.0% 92.5%
4962915 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.73 43.0 5.63e-01 95.6% 100.0%
3953883 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.73 46.0 5.59e-01 99.5% 94.8%
4971715 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.73 44.0 5.55e-01 100.0% 96.2%
4033672 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.73 46.0 5.67e-01 99.0% 97.0%
5039083 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.72 44.0 5.59e-01 97.6% 100.0%
4157810 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.72 43.0 5.45e-01 96.1% 97.6%
4968859 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.70 42.0 5.32e-01 98.1% 98.4%
3982277 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.66 58.0 5.82e-01 100.0% 89.5%
3500954 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.65 45.0 5.04e-01 100.0% 89.0%
4954578 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.64 43.0 5.22e-01 96.6% 100.0%
3929140 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 30.0 3.59e-01 94.2% 66.2%
3176030 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.61 36.0 4.65e-01 98.5% 100.0%
3280102 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.61 37.0 4.53e-01 99.5% 94.6%
4999072 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 32.0 3.92e-01 79.1% 78.5%
4928867 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.61 43.0 4.72e-01 100.0% 87.6%
3837596 2005.1.1.41 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.56 45.0 4.90e-01 99.5% 97.7%
4887824 2007.1.14.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.55 31.0 3.48e-01 97.6% 69.0%
4468768 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.55 39.0 4.39e-01 98.1% 96.1%
3730320 7514.1.1.0 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.55 36.0 4.27e-01 98.5% 98.5%
5048111 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.54 36.0 4.13e-01 96.1% 92.6%
3640485 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.53 39.0 4.29e-01 98.5% 95.2%
3600257 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.53 41.0 4.47e-01 100.0% 98.8%
3731744 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.53 39.0 4.25e-01 99.0% 92.9%
4999365 7567.1.1.1 a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.52 43.0 4.36e-01 100.0% 88.3%
4343305 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 32.0 3.58e-01 80.6% 78.8%
4244232 2003.1.1.26 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Glyco_hydro_4 0.50 39.0 4.14e-01 94.7% 92.8%
D2 high residues 233-310
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.57 43.0 3.51e-01 82.1% 91.0%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.54 39.0 3.33e-01 78.2% 58.5%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.53 36.0 3.32e-01 70.5% 58.3%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.52 38.0 2.84e-01 79.5% 37.6%
6diiL01 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.51 43.0 2.79e-01 100.0% 97.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083839 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.75 58.0 4.11e-01 83.3% 27.6%
3472873 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.53 40.0 3.37e-01 83.3% 64.8%
4965432 3355.1.1.5 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › SCFA_trans 0.51 42.0 2.67e-01 96.2% 94.0%
3719269 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.50 37.0 3.61e-01 79.5% 83.3%