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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00217
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00217
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-119
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w1vA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.79 | 43.0 | 3.84e-01 | 96.6% | 39.2% |
| 6erkA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.75 | 41.0 | 3.68e-01 | 96.6% | 39.0% |
| 4a0fB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.69 | 36.0 | 3.19e-01 | 94.8% | 34.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.68 | 42.0 | 3.75e-01 | 100.0% | 42.5% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.68 | 42.0 | 4.77e-01 | 100.0% | 83.5% |
| 3i4pA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.68 | 35.0 | 4.04e-01 | 87.9% | 67.9% |
| 2cpdA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.67 | 40.0 | 4.77e-01 | 100.0% | 92.0% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.66 | 41.0 | 4.88e-01 | 96.6% | 90.1% |
| 2eo5A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.65 | 36.0 | 3.35e-01 | 94.8% | 41.9% |
| 2joiA00 | 3.30.310.190 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.64 | 48.0 | 5.26e-01 | 99.1% | 95.8% |
| 2zfzD00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.63 | 33.0 | 3.86e-01 | 93.1% | 72.2% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.63 | 45.0 | 4.90e-01 | 100.0% | 89.6% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 4.66e-01 | 100.0% | 84.2% |
| 3tu3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.61 | 39.0 | 3.95e-01 | 96.6% | 63.9% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.59 | 41.0 | 4.57e-01 | 100.0% | 94.3% |
| 1uv7A00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.59 | 32.0 | 3.73e-01 | 92.2% | 76.3% |
| 7cu8E01 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.58 | 42.0 | 3.60e-01 | 79.3% | 47.3% |
| 1wvfA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.58 | 39.0 | 3.15e-01 | 99.1% | 34.6% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 42.0 | 3.68e-01 | 79.3% | 52.4% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 50.0 | 4.62e-01 | 97.4% | 95.9% |
| 3nqnA00 | 3.30.530.70 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 | 0.56 | 49.0 | 4.50e-01 | 96.6% | 96.7% |
| 1p50A02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.56 | 51.0 | 3.88e-01 | 100.0% | 59.2% |
| 1jyoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.55 | 37.0 | 3.64e-01 | 97.4% | 62.3% |
| 4ewtA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 47.0 | 4.72e-01 | 100.0% | 93.0% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 46.0 | 4.64e-01 | 100.0% | 93.0% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 27.0 | 2.86e-01 | 100.0% | 51.5% |
| 2f7aA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 43.0 | 4.25e-01 | 89.7% | 81.8% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 4.49e-01 | 100.0% | 90.5% |
| 3rpcA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 38.0 | 2.98e-01 | 75.9% | 41.6% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 4.34e-01 | 100.0% | 89.5% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 45.0 | 4.52e-01 | 100.0% | 93.2% |
| 2ckfC01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.52 | 44.0 | 3.38e-01 | 96.6% | 55.6% |
| 3cjmA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 43.0 | 3.43e-01 | 93.1% | 98.8% |
| 7xinA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 36.0 | 3.77e-01 | 90.5% | 78.0% |
| 5koxA02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 34.0 | 3.83e-01 | 100.0% | 90.7% |
| 3ub0A02 | 3.30.70.3540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain | 0.51 | 27.0 | 3.02e-01 | 82.8% | 63.0% |
| 1cqaA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 36.0 | 3.60e-01 | 79.3% | 69.9% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3177356 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.82 | 44.0 | 5.20e-01 | 95.7% | 76.2% |
| 4327650 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.76 | 42.0 | 2.76e-01 | 96.6% | 14.6% |
| 5071748 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.71 | 44.0 | 5.41e-01 | 94.8% | 97.3% |
| 3659455 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.70 | 54.0 | 5.22e-01 | 97.4% | 72.3% |
| 4197245 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.70 | 43.0 | 5.17e-01 | 96.6% | 91.3% |
| 4778785 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.68 | 42.0 | 4.84e-01 | 100.0% | 85.5% |
| 4889884 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.68 | 42.0 | 3.69e-01 | 100.0% | 41.5% |
| 4655257 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.68 | 42.0 | 5.00e-01 | 96.6% | 90.0% |
| 3889564 | 331.18.1.4 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B | 0.68 | 57.0 | 5.04e-01 | 100.0% | 63.7% |
| 3841571 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.68 | 56.0 | 4.81e-01 | 100.0% | 56.7% |
| 3194381 | 331.1.1.12 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF155 | 0.68 | 51.0 | 4.82e-01 | 100.0% | 67.4% |
| 5000281 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.67 | 44.0 | 5.07e-01 | 100.0% | 92.9% |
| 4779977 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 41.0 | 4.66e-01 | 100.0% | 83.5% |
| 4955450 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.66 | 54.0 | 5.30e-01 | 100.0% | 81.6% |
| 3584302 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.65 | 58.0 | 4.82e-01 | 96.6% | 72.0% |
| 3232913 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.65 | 55.0 | 4.71e-01 | 100.0% | 57.3% |
| 5010788 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.63 | 43.0 | 3.41e-01 | 100.0% | 34.8% |
| 4977467 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.63 | 53.0 | 5.53e-01 | 96.6% | 100.0% |
| 3739823 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.63 | 54.0 | 5.26e-01 | 96.6% | 84.8% |
| 3584558 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.62 | 49.0 | 5.11e-01 | 95.7% | 89.9% |
| 4088221 | 306.2.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C | 0.62 | 32.0 | 3.44e-01 | 93.1% | 56.0% |
| 3637642 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.61 | 38.0 | 3.93e-01 | 96.6% | 65.5% |
| 3838763 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.60 | 42.0 | 4.85e-01 | 100.0% | 97.6% |
| 4970968 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.60 | 50.0 | 5.10e-01 | 95.7% | 92.9% |
| 3931549 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.60 | 41.0 | 3.57e-01 | 100.0% | 46.3% |
| 4943463 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.59 | 40.0 | 4.23e-01 | 100.0% | 79.0% |
| 4979756 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.59 | 41.0 | 3.96e-01 | 100.0% | 63.0% |
| 4972873 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.58 | 39.0 | 4.48e-01 | 97.4% | 97.6% |
| 3980313 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.57 | 42.0 | 4.36e-01 | 97.4% | 84.8% |
| 6333 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.56 | 50.0 | 4.63e-01 | 97.4% | 96.6% |
| 4963024 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 47.0 | 4.72e-01 | 100.0% | 90.4% |
| 3964728 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.56 | 40.0 | 4.32e-01 | 99.1% | 89.5% |
| 4956062 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.56 | 38.0 | 3.75e-01 | 97.4% | 64.3% |
| 5077368 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 46.0 | 4.48e-01 | 100.0% | 82.4% |
| 3972121 | 7563.1.1.2 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related › Lysine_decarbox | 0.55 | 35.0 | 2.55e-01 | 96.6% | 23.9% |
| 3183787 | 3012.1.1.10 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › ISN1 | 0.54 | 38.0 | 4.06e-01 | 92.2% | 85.0% |
| 4129052 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.52 | 36.0 | 3.95e-01 | 84.5% | 86.3% |
| 4967239 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.52 | 35.0 | 4.07e-01 | 84.5% | 96.4% |
| 5083122 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.52 | 35.0 | 3.98e-01 | 87.1% | 90.9% |
| 5048268 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.51 | 34.0 | 2.59e-01 | 87.1% | 29.4% |
| 3476117 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.51 | 40.0 | 4.01e-01 | 86.2% | 82.6% |
| 3313892 | 708.1.1.5 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › AFT | 0.51 | 40.0 | 4.10e-01 | 83.6% | 87.3% |
| 3468691 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.50 | 37.0 | 4.13e-01 | 94.0% | 98.9% |
| 3815659 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.50 | 41.0 | 3.78e-01 | 87.1% | 100.0% |