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P0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00219
Bact-VirP0_An_pond3_S8_170907_scaffold_156969_prodigal-single.1__X__X__00219
Identity
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-50_113-138
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.72 | 43.0 | 4.05e-01 | 89.5% | 48.4% |
| 2yn3B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 36.0 | 3.77e-01 | 92.1% | 56.3% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.66 | 47.0 | 4.34e-01 | 92.1% | 58.9% |
| 3lqmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 40.0 | 3.87e-01 | 90.8% | 52.2% |
| 4p4tA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 41.0 | 2.73e-01 | 88.2% | 14.6% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.63 | 39.0 | 4.00e-01 | 90.8% | 66.2% |
| 2q7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 36.0 | 3.61e-01 | 89.5% | 51.9% |
| 1fnoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 47.0 | 4.12e-01 | 80.3% | 100.0% |
| 1mkfA01 | 2.60.40.1330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 40.0 | 2.97e-01 | 90.8% | 27.6% |
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 4.30e-01 | 90.8% | 100.0% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 3.78e-01 | 82.9% | 100.0% |
| 1dd1A00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.56 | 46.0 | 3.43e-01 | 94.7% | 86.9% |
| 2dmhA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.56 | 41.0 | 3.35e-01 | 92.1% | 42.1% |
| 1uwkB01 | 3.40.1770.10 | Alpha Beta › 3-Layer(aba) Sandwich › Urocanase fold › Urocanase superfamily | 0.56 | 47.0 | 3.04e-01 | 92.1% | 28.1% |
| 2hivA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.56 | 46.0 | 3.33e-01 | 89.5% | 81.1% |
| 4iykA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.55 | 34.0 | 3.27e-01 | 89.5% | 51.1% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 38.0 | 3.09e-01 | 72.4% | 82.6% |
| 3v10A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 38.0 | 3.13e-01 | 88.2% | 39.0% |
| 8bxrA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 35.0 | 3.45e-01 | 92.1% | 58.6% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 33.0 | 3.31e-01 | 89.5% | 57.5% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.54 | 45.0 | 4.04e-01 | 94.7% | 66.1% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 34.0 | 3.36e-01 | 92.1% | 57.0% |
| 6rarI01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 41.0 | 3.05e-01 | 82.9% | 86.7% |
| 1h0hA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 2.93e-01 | 84.2% | 69.5% |
| 1vajA02 | 3.30.1490.150 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 | 0.53 | 38.0 | 3.84e-01 | 86.8% | 78.4% |
| 1l3lA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 38.0 | 3.00e-01 | 77.6% | 92.9% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.52 | 34.0 | 3.46e-01 | 89.5% | 67.1% |
| 2f9wA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 41.0 | 3.50e-01 | 89.5% | 85.5% |
| 6x5vA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 3.28e-01 | 89.5% | 56.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5038393 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.67 | 42.0 | 3.45e-01 | 92.1% | 34.8% |
| 3724523 | 4121.1.1.7 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 | 0.63 | 51.0 | 3.31e-01 | 89.5% | 47.8% |
| 3400735 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.61 | 36.0 | 4.06e-01 | 90.8% | 80.0% |
| 3414064 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.61 | 37.0 | 4.11e-01 | 90.8% | 81.8% |
| 3938183 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 50.0 | 4.53e-01 | 94.7% | 77.1% |
| 3385583 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.59 | 48.0 | 3.44e-01 | 89.5% | 53.2% |
| 3595908 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 42.0 | 3.55e-01 | 90.8% | 46.2% |
| 3302114 | 109.4.1.619 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase | 0.57 | 39.0 | 3.31e-01 | 72.4% | 92.0% |
| 3821185 | 109.4.1.1476 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif | 0.57 | 40.0 | 2.38e-01 | 75.0% | 20.0% |
| 5007504 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.56 | 43.0 | 2.96e-01 | 81.6% | 54.3% |
| 4094634 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.56 | 39.0 | 3.52e-01 | 72.4% | 83.8% |
| 3390573 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.56 | 37.0 | 4.07e-01 | 89.5% | 86.4% |
| 4981178 | 321.2.1.0 ↗ | a+b two layers › Glutamine synthetase-like › C-terminal domain in urocanase › C-terminal domain in urocanase | 0.55 | 47.0 | 3.41e-01 | 93.4% | 46.9% |
| 4979086 | 321.2.1.0 ↗ | a+b two layers › Glutamine synthetase-like › C-terminal domain in urocanase › C-terminal domain in urocanase | 0.54 | 47.0 | 3.44e-01 | 96.1% | 51.7% |
| 3358129 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.53 | 39.0 | 2.31e-01 | 78.9% | 19.1% |
| 3513312 | 355.1.1.11 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › TIG_plexin | 0.52 | 38.0 | 3.49e-01 | 89.5% | 58.0% |
| 3481921 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 40.0 | 3.26e-01 | 84.2% | 91.3% |
| 4947248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 31.0 | 2.74e-01 | 77.6% | 37.4% |
| 3379348 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.51 | 36.0 | 2.22e-01 | 75.0% | 49.7% |
| 5081038 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 3.48e-01 | 90.8% | 61.0% |
| 4974400 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.51 | 38.0 | 2.70e-01 | 82.9% | 53.7% |
| 3320698 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.50 | 37.0 | 2.20e-01 | 78.9% | 14.5% |
| 3335541 | 109.4.1.2173 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif | 0.50 | 37.0 | 2.41e-01 | 78.9% | 22.3% |
D2
medium
residues 51-112
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pohA02 | 6.10.140.940 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 56.0 | 5.22e-01 | 83.9% | 63.6% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.73 | 64.0 | 6.06e-01 | 100.0% | 92.1% |
| 3i6iA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 46.0 | 3.35e-01 | 79.0% | 24.3% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.66 | 53.0 | 4.81e-01 | 88.7% | 69.4% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 53.0 | 4.63e-01 | 98.4% | 70.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5042276 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.73 | 61.0 | 5.02e-01 | 88.7% | 76.7% |
| 3576107 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.72 | 63.0 | 5.04e-01 | 100.0% | 50.0% |
| 3505389 | 2004.1.1.144 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 | 0.70 | 62.0 | 3.84e-01 | 100.0% | 18.6% |
| 3257188 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.67 | 58.0 | 4.54e-01 | 95.2% | 47.7% |